辦公地址：二綜B417

電子郵件：linzhongxu@mail.hzau.edu.cn

林忠旭，男，1978年2月出生，教授，博士生導師，山東煙台人。1996－2000年在77779193永利官网作物遺傳育種專業學習，獲農學學士學位。2000－2005年在77779193永利官网攻讀作物遺傳育種博士學位（碩博連讀），于2005年畢業，獲得農學博士學位。2005年畢業後留校執教，在作物遺傳改良國家重點實驗室棉花課題組進行研究工作， 2009年1－8月在美國新墨西哥州立大學從事學術訪問，進行棉花功能标記的開發與應用研究。

主要從事棉花種質資源的收集、遺傳評價、創新與利用等相關研究。目前的研究内容有（1）棉花品種遺傳結構解析與品種改良機理研究；（2）陸地棉種間導入系的構建：利用海島棉、四倍體野生種達爾文棉、毛棉和黃褐棉、陸地棉野生和半野生種作為供體，向陸地棉進行片段導入，利用這些導入系進行棉花優異性狀篩選和重要經濟性狀基因克隆，改良陸地棉。

在研項目：

國家自然科學基金面上項目：qFL-c10-2調控棉花纖維長度的分子機制及其與qFL-c10-1的聚合，2024-2027，主持

國家自然科學基金面上項目：qFL-c10-1增加棉花纖維長度的機理研究，2019-2022，主持

國家重點研發計劃子課題任務：棉花理想株型和高産基因資源發掘和利用，2022-2027，主持

已結題項目：

國家自然科學基金：分子标記輔助選擇構建棉花種間單片段代換系及其遺傳評價，2007-2009，主持

國家自然科學基金：海島棉重要經濟性狀遺傳基礎的分子解析及其應用，2009-2011，主持

國家自然科學基金：棉花偏分離染色體遺傳機理與效應分析，2012-2015，主持

863子項目"轉基因新技術開發及新品種選育"，2007.01－2009.12，主持

農業部棉花種子真實性和純度分子檢測技術研究，2011-2013年，主持

77779193永利官网自主科技創新基金目标導向項目：陸地棉群體結構分析及關聯作圖，2012-2013，主持

轉基因專項子課題“棉花導入系構建”，2011－2015年，主持

973課題“棉花高油脂産量優異親本形成的遺傳解析與利用”2011－2015，參加

湖北省傑青：利用連鎖和關聯分析剖析棉籽含油量的遺傳基礎，2014-2016年，主持

國家自然科學基金：利用MAGIC群體解析陸地棉重要經濟性狀的遺傳基礎，2014-2017，主持

國家自然科學基金：qBW12，一個影響棉花海陸種間雜交單鈴重QTL的克隆與功能驗證，2016-2019，主持

轉基因專項任務“棉花高效基因克隆遺傳材料的創制及基因克隆應用研究”，2016－2020年，主持

湖北省重大科技創新計劃：優質早熟适合機械化生産棉花新品種選育，2018-2020，參加

重點研發計劃：優質抗病棉花新品種培育，2018-2020，參加

教學研究與教學改革

        1. 2006年省級教改項目：植物生物技術專業本科生專業基礎課實踐教學模式改革與創新（主持）

2. 2014年國家視頻資源共享課：植物生物技術（主持）

3. 2014年77779193永利官网百門精品實踐課程：生物技術綜合實驗（主持）

4. 2019年校級慕課建設：植物生物技術（主持）

1. 林忠旭、張獻龍、劉欣欣、趙文霞。陸地棉棉仁含油量基因GhKAS1的分子标記及其篩選方法，ZL201810200184.4。

2. 林忠旭、任高峰、李海平、張獻龍、高斌。棉花恢複系恢複基因的分子标記及其應用，ZL201910027112.9。

3. 林忠旭、張獻龍、溫天旺、吳迷。一種鑒别深棕色棉花的分子标記，ZL201710750264.2。

4. 尤春源、聶新輝、林忠旭、秦江鴻、趙圖強、雷江榮、馮國禮、呂軍。鑒别新疆彩色棉系列1至23号品種的微衛星标記特異性引物及其應用，ZL201310391563.3。

5. 張獻龍、林忠旭、劉傳祥。一種棉花分子遺傳連鎖作圖的方法，ZL03119012.X。

主要獎勵：

1. 林忠旭。2020年産學研合作創新獎（個人獎）。

2. 張獻龍，王茂軍，塗禮莉，林忠旭，袁道軍。“棉花纖維發育和品質形成生物學”。2020年湖北省自然科學一等獎。

3. 張獻龍，聶以春，朱龍付，郭小平，盧懷玉，劉立清，林忠旭，塗禮莉，楊國正，金雙俠，楊細燕，鄒勇，餘宏章，袁道軍。“棉花種質創新及強優勢雜交棉新品種選育與應用”，2013年國家科技進步二等獎。

4. 張獻龍、聶以春、朱龍付、林忠旭、郭小平、盧懷玉、楊國正、餘宏章、塗禮莉。強優勢多抗雜交棉新品種“華雜棉H318”的選育與應用。2012年湖北省科技進步獎一等獎。

5. 張獻龍，林忠旭，朱龍付，塗禮莉，金雙俠，郭小平。“棉花分子育種技術體系建立與應用”，2008年湖北省技術發明二等獎。

6. 2008年度“中國百篇最具影響國内學術論文”。

7. 林忠旭，《棉花分子标記遺傳連鎖圖構建和産量、纖維品質相關性狀定位》，77779193永利官网優秀博士學位論文，2007年7月。

8. 林忠旭，《Linkage map construction and mapping QTL for cotton fiber quality using SRAP, SSR and RAPD》獲湖北省第十一屆自然科學優秀學術論文二等獎，2006年12月。

9. 2016年研究生指導教師“教書育人獎”。

10. 2013年、2015年湖北省優秀學士學位論文指導獎。

11. 2012、2013、2014年77779193永利官网優秀碩士論文指導獎。

12. 2016、2019、2020年77779193永利官网優秀博士論文指導獎。

13. 77779193永利官网2009屆本科生創新論文（設計）指導獎、湖北省優秀學士學位論文指導獎。

14. 2006年度、2007年度、2014年度77779193永利官网教學質量優秀三等獎。

15. 2008年77779193永利官网第八屆青年教師講課競賽三等獎。

1. Yang Yang, Chunyuan You, Nian Wang, Mi Wu, Yu Le, Maojun Wang, Xianlong Zhang, Yu Yu*, Zhongxu Lin*. Gossypium mustelinum genome and an introgression population enrich interspecific genetics and breeding in cotton. Theoretical and Applied Genetics, 2023, 136:130.

2. Xinyi Chang†, Chunping Guo†, Zhenyuan Pan, Yuanlong Wu, Chao Shen, Lei Chao, Guangling Shui, Chunyuan You, Jianwei Xu*, Zhongxu Lin* and Xinhui Nie*. QTL mapping for fiber quality based on introgression lines population from G. hirsutum × G. tomentosum. Agriculture 2023, 13 (3), 579.

3. Yongqi Li, Meng Zhang, Kashif Shahzad, Yang Han, Xuexian Zhang, Liping Guo, Tingxiang Qi, Huini Tang, Hailin Wang, Xiuqin Qiao, Juanjuan Feng, Zhongxu Lin*, Jianyong Wu*, Chaozhu Xing*. Development of mitochondrial simple sequence repeat markers to simultaneously distinguish cytoplasmic male sterile sources in cotton. Functional & Integrative Genomics, 2023, 23, 25

4. Youzhong Li, Xinyu Zhang, Zhongxu Lin, Qian-Hao Zhu, Yanjun Li, Fei Xue, Shuaishuai Cheng, Hongjie Feng, Jie Sun*, Feng Liu*. Comparative transcriptome analysis of interspecific CSSLs reveals candidate genes and pathways involved in verticillium wilt resistance in cotton (Gossypium hirsutum L.). Industrial Crops & Products, 2023, 197, 116560.

5. Nian Wang, Yuanxue Li, Chao Shen, Yang Yang, Hongya Wang, Tian Yao, Xianlong Zhang, Keith Lindsey, Zhongxu Lin*. High-resolution sequencing of nine elite upland cotton cultivars uncovers genic variations and breeding improvement targets. The Plant Journal, 2023, 113 (1): 145-159.

6. Ruiting Zhang, Chao Shen, De Zhu, Yu Le, Nian Wang, Yuanxue Li, Xianlong Zhang & Zhongxu Lin*. Fine-mapping and candidate gene analysis of qFL-c10-1 controlling fiber length in upland cotton (Gossypium hirsutum L.). Theoretical and Applied Genetics, 2022, 135 (12), 4483–4494.

7. Nian Wang, Beibei Zhang, Tian Yao, Chao Shen, Tianwang Wen, Ruiting Zhang, Yuanxue Li, Yu Le, Zhonghua Li, Xianlong Zhang and Zhongxu Lin*. Re enhances anthocyanin and proanthocyanidin accumulation to produce red foliated cotton and brown fiber. Plant Physiology, 2022: 189: 1466–1481.

8. Bin Gao, Gaofeng Ren, Tianwang Wen, Haiping Li, Xianlong Zhang, Zhongxu Lin*. A super PPR cluster for restoring fertility revealed by genetic mapping, homocap-seq and de novo assembly in cotton. Theoretical and Applied Genetics, 2022, 135: 637-652.

9. Feng J, Li Y, Zhang J, Zhang M, Zhang X, Shahzad K, Guo L, Qi T, Tang H, Wang H, Qiao X, Lin Z*, Xing C* and Wu J*. Transcript complexity and new insights of restorer line in CMS-D8 cotton through full-length transcriptomic analysis. Front Plant Sci, 2022, 13: 930131.

10. Yongqi Li, Taili Nie, Meng Zhang, Xuexian Zhang, Kashif Shahzad, Liping Guo, Tingxiang Qi, Huini Tang, Hailin Wang, Xiuqin Qiao, Juanjuan Feng, Zhongxu Lin*, Jianyong Wu*, Chaozhu Xing*. Integrated analysis of small RNA, transcriptome and degradome sequencing reveals that micro-RNAs regulate anther development in CMS cotton. Industrial Crops & Products, 2022, 176, 114422.

11. Bei Han#, Fengjiao Wang#, Zhilin Liu, Lin Chen, Dandan Yue, Weinan Sun, Zhongxu Lin, Xianlong Zhang, Xiaofeng Zhou*, Xiyan Yang*. 2022. Transcriptome and metabolome profiling of interspecific CSSLs reveal general and specific mechanisms of drought resistance in cotton. Theoretical and Applied Genetics, 2022, 135:3375–3391.

12. Cong Huang, Chao Shen, Tianwang Wen, Bin Gao, De Zhu, Dingguo Li*, Zhongxu Lin*. Genome‑wide association mapping for agronomic traits in an 8‑way Upland cotton MAGIC population by SLAF‑seq. Theoretical and Applied Genetics, 2021, 134: 2459-2468.

13. Chunping Guo, Zhenyuan Pan, Chunyuan You, Xiaofeng Zhou, Cong Huang, Chao Shen, Ruihai Zhao, Qingyong Yang, Longfu Zhu, Raheel Shahzad, Fande Meng, Zhongxu Lin* and Xinhui Nie*. Association mapping and domestication analysis to dissect genetic improvement process of upland cotton yield-related traits in China. Journal of Cotton Research, 2021, 4:10.

14. De Zhu, Yu Le, Ruiting Zhang, Xiaojing Li and Zhongxu Lin*. A global survey of the gene network and key genes for oil accumulation in cultivated tetraploid cottons. Plant Biotechnology Journal, 2021, 19 (6): 1170-1182.

15. Chao Shen, Nian Wang, De Zhu, Pengcheng Wang, Maojun Wang, Tianwang Wen, Yu Le, Mi Wu, Tian Yao, Xianlong Zhang, Zhongxu Lin*. Gossypium tomentosum genome and interspecific ultra-dense genetic maps reveal genomic structures, recombination landscape and flowering depression in cotton. Genomics, 2021, 113, 1999-2009.

16. Hantao Wang, Ruiting Zhang, Chao Shen, Ximei Li, De Zhu, Zhongxu Lin*. Transcriptome and QTL analyses reveal candidate genes for fiber quality in Upland cotton. The Crop Journal, 2020, 8 (1): 98-106.

17. Muhammad Mahmood Ahmed, Cong Huang, Chao Shen, Anam Qadir Khan, Zhongxu Lin*. Map-based cloning of qBWT-c12 discovered brassinosteroid-mediated control of organ size in cotton. Plant science, 2020, 291: 110315.

18. De Zhu, Ximei Li, Zhiwei Wang, Chunyuan You, Xinhui Nie, Jie Sun, Xianlong Zhang, Dawei Zhang^* and Zhongxu Lin^*. Genetic dissection of an allotetraploid interspecific CSSLs guides interspecific genetics and breeding in cotton. BMC Genomics, 2020, 21: 431.

19. Xinhui Nie^#, Tianwang Wen^#, Panxia Shao, Binghui Tang, Aini Nuriman-guli, Yu Yu, Xiongming Du^*, Chunyuan You^*, Zhongxu Lin^*. High-density genetic variation maps reveal the correlation between asymmetric interspecific introgressions and improvement of agronomic traits in Upland and Pima cotton varieties developed in Xinjiang, China. The Plant Journal, 2020, 103: 677-689.

20. Tianwang Wen, Tian Yao, Chunyuan You, Zhongxu Lin*. A case study of a micro-inversion event in dark brown fiber cotton (Gossypium hirsutum). The Crop Journal, 2020, 8: 577-585.

21. 吳迷, 汪念, 沈超, 黃聰, 溫天旺, 林忠旭*. 基于重測序的陸地棉InDel标記開發與評價. 作物學報, 2019, 45 (2): 196-203.

22. Maojun Wang#, Lili Tu#, Daojun Yuan#, De Zhu, Chao Shen, Jianying Li, Fuyan Liu, Liuling Pei, Pengcheng Wang, Guannan Zhao, Zhengxiu Ye, Hui Huang, Feilin Yan, Yizan Ma, Lin Zhang, Min Liu, Jiaqi You, Yicheng Yang, Zhenping Liu, Fan Huang, Baoqi Li, Ping Qiu, Qinghua Zhang, Longfu Zhu, Shuangxia Jin, Xiyan Yang, Ling Min, Guoliang Li, Ling-Ling Chen, Hongkun Zheng, Keith Lindsey*, Zhongxu Lin*, Joshua A. Udall* & Xianlong Zhang*. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nature Genetics, 2019, 51: 224-29.

23. Tianwang Wen, Baosheng Dai, Tao Wang, Xinxin Liu, Chunyuan You*, Zhongxu Lin*. Genetic variations in plant architecture traits in cotton (Gossypium hirsutum) revealed by a genome wide association study. The Crop Journal, 2019, 7 (2): 209-216.

24. Shen C, Wang N, Huang C, Wang M, Zhang X, Lin Z*. Population genomics reveals a fine-scale recombination landscape for genetic improvement of cotton. The Plant Journal, 2019, 99: 494-505.

25. Wenxia Zhao#, Xianhui Kong#, Yang Yang#, Xinhui Nie, Zhongxu Lin*. Association mapping seed kernel oil content in upland cotton using genome-wide SSRs and SNPs. Molecular Breeding, 2019, 39: 105.

26. Ayaz Ali Keerio, Chao Shen, Yichun Nie, Muhammad Mahmood Ahmed, Xianlong Zhang and Zhongxu Lin*. QTL mapping for fiber quality and yield traits based on introgression lines derived from Gossypium hirsutum × G. tomentosum. International Journal of Molecular Science, 2018, 19: 243.

27. Cong Huang, Chao Shen, Tianwang Wen, Bin Gao, De Zhu, Xiaofang Li, Muhammad Mahmood Ahmed, Dingguo Li*, Zhongxu Lin*. SSR-based association mapping of fiber quality in upland cotton using 8-way MAGIC population. Molecular Genetics and Genomics, 2018, 293: 793-805.

28. Tianwang Wen, Mi Wu, Chao Shen, Bin Gao, De Zhu, Xianlong Zhang, Chunyuan You,* and Zhongxu Lin*. Linkage and association mapping reveals the genetic basis of brown fibre (Gossypium hirsutum). Plant Biotechnology Journal, 2018, 16: 1654-1666.

29. 黃聰, 李曉方, 李定國*, 林忠旭*. 利用陸地棉MAGIC群體定位産量、生育期和株高性狀的QTL. 作物學報, 2018, 44 (9): 1320-1333.

30. 戴寶生, 郭歡樂, 尤春源, 張獻龍, 林忠旭*. 棉花陸海雜種标記偏分離染色體上重要農藝性狀的QTL定位. 棉花學報, 2018, 30 (6): 435-447.

31. Dai B, Guo H, Huang C, Ahmed MM and Lin Z*. Identification and characterization of segregation distortion loci on cotton chromosome 18. Frontiers in Plant Science, 2017, 7: 2037.

32. Huang C, Nie X, Shen C, You C, Li W, Zhao W, Zhang X* and Lin Z*. Population structure and genetic basis of the agronomic traits of Upland cotton in China revealed by a genome-wide association study using high-density SNPs. Plant Biotechnology Journal, 2017, 15: 1374-1386.

33. Ahmed MM, Shen C, Khan AQ, Wahid MA, Shaban M and Lin Z*. A comparative genomics approach revealed evolutionary dynamics of microsatellite imperfection and conservation in genus Gossypium. Hereditas, 2017, 154: 12.

34. Shen C, Jin X, Zhu D and Lin Z*. Uncovering SNP and indel variations of tetraploid cottons by SLAF-seq. BMC Genomics, 2017, 18: 247.

35. Shen C, Li X, Zhang R, Lin Z*. Genome-wide recombination rate variation in a recombination map of cotton. PLoS ONE, 2017, 12 (11): e0188682.

36. 沈超, 李定國, 聶以春, 林忠旭*. 利用黃褐棉染色體片段導入系定位産量和纖維品質性狀QTL. 作物學報, 2017, 43 (12): 1733-1745.

37. Nie X, Huang C, You C, Li W, Zhao W, Shen C, Zhang B, Wang H, Yan Z, Dai B, Wang M, Zhang X and Lin Z*. Genome-wide SSR-based association mapping for fiber quality in nation-wide Upland cotton inbreed cultivars in China. BMC Genomics, 2016, 17: 352.

38. Liu Y, Peng R, Liu F, Wang X, Cui X, Zhou Z, Wang C, Cai X, Wang Y, Lin Z* and Wang K*. A Gossypium BAC clone contains key repeat components distinguishing sub-genome of allotetraploidy cottons. Molecular Cytogenetics, 2016, 9: 27.

39. Dai B, Guo H, Huang C, Zhang X and Lin Z*. Genomic heterozygosity and hybrid breakdown in cotton (Gossypium): different traits, different effects. BMC Genet, 2016, 17: 58.

40. Li X, Jin X, Wang H, Zhang X, and Lin Z*. Structure, evolution, and comparative genomics of tetraploid cotton based on a high-density genetic linkage map. DNA Research, 2016, 23 (3): 283-293.

41. Wang H, Huang C, Zhao W, Dai B, Shen C, Zhang B, Li D*, Lin Z*. Identification of QTL for fiber quality and yield traits using two immortalized backcross populations in Upland cotton. PLoS ONE, 2016, 11 (12): e0166970.

42. Nie X, Tu J, Wang B, Zhou X*, Lin Z*. A BIL population derived from G. hirsutum and G. barbadense provides a resource for cotton genetics and breeding. PLoS ONE, 2015, 10 (10): e0141064.

43. 聶新輝, 尤春源, 鮑健, 李曉方, 惠慧, 劉洪亮, 秦江鴻, 林忠旭*. 基于關聯分析的新陸早棉花品種農藝和纖維品質性狀優異等位基因挖掘. 中國農業科學, 2015, 48 (15): 2891-2910.

44. Chen X, Jin X, Li X, Lin Z*. Genetic mapping and comparative expression analysis of transcription factors in cotton. PLoS ONE, 2015, 10 (5): e0126150.

45. Wang H, Jin X, Zhang B, Shen C and Lin Z*. Enrichment of an intraspecific genetic map of Upland cotton by developing markers using parental RAD sequencing. DNA Research, 2015, 22 (2): 147-160.

46. Wang H, Huang C, Guo H, Li X, Zhao W, Dai B, Yan Z, Lin Z*. QTL mapping for fiber and yield traits in Upland cotton under multiple environments. PLoS ONE. 2015, 10 (6): e0130742.

47. Liu C, Yuan D, Lin Z*. Construction of an EST-SSR-based interspecific transcriptome linkage map of fibre development in cotton. Journal of Genetics, 2014, 93 (3): 689-697.

48. 聶新輝, 尤春源, 李曉方, 秦江鴻, 黃聰, 郭歡樂, 王夏青, 趙文霞, 林忠旭*. 新陸早棉花品種DNA指紋圖譜的構建及遺傳多樣性分析. 作物學報, 2014，40 (12): 2104-2117.

49. Li X, Gao W, Guo H, Zhang X, Fang DD and Lin Z*. Development of EST-based SNP and InDel markers and their utilization in tetraploid cotton genetic mapping. BMC Genomics, 2014, 15: 1046.

50. Ren G, Li X, Lin Z*. Mining, genetic mapping and expression analysis of EST-derived resistance gene homologs (RGHs) in cotton. BMC Plant Biology, 2014, 14: 203.

51. 尤春源, 聶新輝, 張勝, 郭歡樂, 王夏青, 林忠旭*. 新疆彩色棉23個品種指紋圖譜的構建及遺傳多樣性分析. 棉花學報, 2014, 26 (2): 161-170.

52. Wang H, Li X, Gao W, Jin X, Zhang X, Lin Z*. Comparison and development of EST-SSRs from two 454 sequencing libraries of Gossypium barbadense. Euphytica, 2014, 198: 277-288.

53. Tu JL, Zhang MJ, Wang XQ, Zhang XL and Lin ZX*. Genetic dissection of Upland cotton (Gossypium hirsutum) cultivars developed in Hubei Province by mapped SSRs. Genetics and Molecular Research, 2014, 13 (1): 782-790.

54. Ahmed MM, Guo H, Huang C, Zhang X and Lin Z*. Selection of core SSR markers for fingerprinting Upland cotton cultivars and hybrids. Austrilian Journal of Crop Science, 2013, 7 (12): 1912-1920.

55. Chen X, Gao W, Zhang J, Zhang X and Lin Z*. Linkage mapping and expression analysis of miRNAs and their target genes during fiber development in cotton. BMC Genomics, 2013, 14: 706.

56. Wang XQ, Yu Y, Li W, Guo HL, Lin ZX*, Zhang XL. Association analysis of yield and fiber quality traits in Gossypium barbadense with SSRs and SRAPs. Genetics and Molecular Research, 2013, 12 (3): 3353-3362.

57. Liu C, Yuan D, Zhang X and Lin Z*. Isolation, characterization and mapping of genes differentially expressed during fibre development between Gossypium hirsutum and G. barbadense by cDNA-SRAP. Journal of Genetics, 2013, 92: 175-181.

58. Wang X, Yu Y, Sang J, Wu Q, Zhang X, Lin Z*. Intraspecific linkage map construction and QTL mapping of yield and fiber quality of Gossypium babardense. Austrilian Journal of Crop Science, 2013, 7 (9):1252-1261.

59. Li X, Yuan D, Zhang J, Lin Z*, Zhang X. Genetic mapping and characteristics of genes specifically or preferentially expressed during fiber development in cotton. PLoS ONE, 2013, 8 (1): e54444.

60. Yuan D, Liang S, Lin Z* and Zhang X. In silico comparative analysis of EST-SSRs in three cotton genomes. African Journal of Biotechnology, 2012, 11 (69): 13269-13371.

61. Wang B, Nie Y, Lin Z*, Zhang X, Liu J and Bai J. Molecular diversity, genomic constitution, and QTL mapping of fiber quality by mapped SSRs in introgression lines derived from Gossypium hirsutum × G. darwinii Watt. Theoretical and Applied Genetics, 2012, 125: 1263-1274.

62. Lin Z, Wang Y, Zhang X and Zhang J. Functional markers for cellulose synthase and their comparison to SSRs in cotton. Plant Molecular Biology Reporter, 2012, 30: 1270-1275.

63. Li X, Yuan D, Wang H, Chen X, Wang B, Lin Z*, Zhang X. Increasing cotton genome coverage with polymorphic SSRs as revealed by SSCP. Genome, 2012, 55 (6): 459-470.

64. Wang X, Ren G, Li X, Tu J, Lin Z* and Zhang X. Development and evaluation of intron and insertion–deletion markers for Gossypium barbadense. Plant Molecular Biology Reporter, 2012, 30: 605-613.

65. Yu Y, Lin Z* and Zhang X. Genome-wide identification of recombination rates of male versus female gametes in inter-specific population of cotton. Pakistan Journal of Botany, 2012, 44 (2): 521-529.

66. Liu C, Lin Z* and Zhang XL. Unbiased genomic distribution of genes related to cell morphogenesis in cotton by chromosome mapping. Plant Cell, Tissue and Organ Culture (PCTOC), 2012, 108 (3): 529-534.

67. Wang XQ, Feng CH, Lin ZX* and Zhang XL. Genetic diversity of sea-island cotton (Gossypium barbadense) revealed by mapped SSRs. Genetics and Molecular Research, 2011, 10 (4): 3620-3631.

68. Yu Y, Yuan DJ, Liang SG, Li XM, Wang XQ, Lin ZX*, Zhang XL. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC₁ population between Gossypium hirsutum and G. barbadense. BMC Genomics, 2011, 12: 15.

69. 餘渝, 張豔欣, 林忠旭*, 張獻龍. 棉花種間BC₁群體偏分離的遺傳剖析. 作物學報, 2010, 36 (10): 1657-1665.

70. Lin Z, Yuan D, Zhang X*. Mapped SSR markers unevenly distributed on the cotton chromosomes. Frontiers in Agriculture of China, 2010, 4 (3): 257-264.

71. 林忠旭, 馮常輝, 郭小平, 張獻龍*. 陸地棉産量、品質相關性狀主效QTL和上位性互作分析. 中國農業科學, 2009, 42 (9): 3036-3047.

72. 餘 渝, 王夏青, 馮常輝, 林忠旭*, 張獻龍. 棉花纖維特異/優勢表達基因的染色體定位. 棉花學報, 2009, 20 (6): 435-441.

73. 張培培, 王夏青, 餘楊, 餘渝, 林忠旭*, 張獻龍. 首批海島棉基因組來源的微衛星标記的分離、評價和定位. 作物學報, 2009, 35 (6): 1013-1020.

74. Lin Z, Zhang Y, Zhang X* and Guo X. A high-density integrative linkage map for Gossypium hirsutum. Euphytica, 2009, 166: 35-45.

75. Lin Z, Wang J, Zhang X*. Characteristics of Gossypium thurberi and G. anomalum introgression lines of G. hirsutum revealed by EST-SSR and gSSR. Cotton science, 2008, 20 (4): 243-248.

76. 餘 渝, 王志偉, 馮常輝, 張豔欣, 林忠旭*, 張獻龍. 草棉EST-SSRs的遺傳評價. 作物學報, 2008, 34 (12): 2085-2091.

77. 李武, 倪薇, 林忠旭*, 張獻龍. 海島棉遺傳多樣性的SRAP标記分析. 作物學報, 2008, 34 (5): 893-898.

78. Zhang Y#, Lin Z#, Li W, Tu L, Nie Y, Zhang X*. Studies of new EST-SSRs derived from Gossypium barbadense. Chinese Science Bulletin, 2007, 52 (18): 2522-2531.

79. Lin Z, He D, Zhang X*, Nie Y, Guo X, Feng C and Stewart JMcD. Linkage map construction and mapping QTL for cotton fiber quality using SRAP, SSR and RAPD. Plant Breeding, 2005, 124 (2): 180-187.

80. 林忠旭, 張獻龍*, 聶以春. 新型标記SRAP在棉花F₂分離群體及遺傳多樣性評價中的适應性分析. 遺傳學報, 2004, 31 (6): 622-626.

81. Lin Z, Zhang X*, Nie Y, He D & Wu M. Construction of a genetic linkage map for cotton based on SRAP. Chinese Science Bulletin, 2003, 48 (19): 2063-2067.

82. 林忠旭, 張獻龍*, 聶以春, 賀道華, 吳茂清. 棉花SRAP遺傳連鎖圖構建. 科學通報, 2003, 48 (15): 1676-1679.

教材與著作

1. 《植物生物技術》（第二版），參編，2012，科學出版社