國家自然科學基金重點項目：棉花優質纖維基因關聯位點的高通量驗證及基因調控網絡構建，2019-2023

國家自然科學基金聯合基金重點項目：棉花抗枯黃萎病關鍵遺傳位點解析與基因功能鑒定， 2018-2021

國家棉花産業技術體系：多抗材料創新崗位科學家， 2016-2020

轉基因重大專項子課題：長江中遊棉區高産高效轉基因棉花新品種培育，2016-2020

授權專利

1) 張獻龍，聶以春，陳妹幼，吳家和：一種快速棉花轉基因的方法。專利授權号：ZL01131087.1

2) 張獻龍，林忠旭，聶以春，賀道華：一種棉花分子遺傳連鎖作圖的方法。專利授權号：ZL03119012.X

3) 張獻龍，朱龍付，塗禮莉，聶以春，郭小平，曾範昌，劉迪秋：從棉花組織中抽提RNA的方法。專利授權号：ZL200410060637.6

4) 張獻龍，金雙俠，聶以春，郭小平，朱華國：超聲波輔助農杆菌轉化棉花胚芽的方法。專利授權号：ZL200710063650.0

5) 張獻龍，林忠旭，劉傳祥：利用EST-SSR标記-棉花纖維轉錄。專利授權号：ZL201010196031.0

6) 塗禮莉，李陽，張獻龍，朱龍付，鄧鋒林：兩個棉花纖維伸長期優勢表達的啟動子及應用。專利授權号： ZL201010582387.8

7) 張獻龍，譚家福，塗禮莉，朱龍付，鄧鋒林：利用棉花基因GbF3H改變花瓣顔色，專利授權号: ZL201010582448.0

8) 張獻龍，鄧鋒林，塗禮莉，朱龍付，譚家福：兩個棉花纖維發育起始優勢表達的強啟動子及其應用。專利授權号：ZL201010582335.0

9) 張獻龍，王彥芹，金雙俠，朱龍付;聶以春：利用花花柴KcNHX1基因培育耐高溫拟南芥的方法。專利授權号：ZL201310160491.1

10) 張獻龍，楊細燕，周婷，王麗晨：GhTZF1在增強植物抗旱性及延緩幹旱誘導的衰老中的應用。專利授權号：ZL201310365814.0

11) 朱龍付，高巍，龍璐，張獻龍，聶以春，袁道軍：棉花硬脂酰去飽和化酶GbSSI2基因及應用。專利授權号：ZL201310019959.5

12) 張獻龍，朱龍付，孫龍清. 一種棉花細胞色素P450基因及應用. 專利授權号：ZL 201210084887.8

13) 朱龍付，張獻龍，高巍，龍璐. 棉花同源結構域轉錄因子基因GbHDTF1及應用. 專利授權号：ZL 201310345168.1

14) 張獻龍，朱龍付，闵玲，胡琴. 介導棉花廣譜抗性的棉花Lac1基因及應用. 專利授權号：ZL 201310109621.9

15) 張獻龍，李陽，塗禮莉：袁道軍：“棉花細胞壁伸展蛋白基因GbEXPATR 及應用”，專利授權号：ZL201410073300.2

16) 張獻龍，韓傑，譚家福，塗禮莉：“一種棉花Phytosulfokine前體基因GhPSKP及制備方法和應用”，專利授權号：ZL 201210260715.1

17) 塗禮莉，胡海燕，譚家福，張獻龍：“一種纖維伸長期優勢表達的啟動子及制備方法和應用”，專利授權号：ZL 201210288775.4

獲得科技獎勵情況

獲得的榮譽稱号

1) 2017獲得全國創新争先獎狀

2) 2016年獲得全國優秀科技工作者稱号

3) 2015年獲湖北省五一勞動獎章

4) 2014年獲湖北十佳師德标兵稱号

5) 2013年入選首批國家百千萬工程領軍人才

6) 2011年“棉花原生質體不對稱融合研究及原生質體細胞壁重建相關基因的表達譜分析” 獲全國優秀百篇博士論文提名獎

7) 2010年獲國務院政府特貼

8) 2010年“棉花體細胞胚發生與合子胚發育相關基因的鑒定、克隆與功能分析”獲年全國優秀百篇博士論文提名獎

9) 2008年“棉花原生質體培養和原生質體對稱融合研究” 獲全國優秀百篇博士論文獎

10) 2008年獲湖北省第四屆優秀科技工作者稱号

11) 2007年入選新世紀百千萬人才工程國家級人選

12) 2006年獲國家教學名師獎

13) 2005年獲湖北省教學成果特等獎

14) 2005年獲國家教學成果一等獎

15) 2005年獲第四屆大北農科技促進獎

16) 2005年入選湖北省新世紀人才工程

17) 2004年獲湖北省政府專項津貼

18) 2004年入選教育部新世紀人才支持計劃

19) 2004年獲全國優秀教師稱号

20) 2004年獲武漢市新長征突擊手稱号

21) 2001年獲湖北省傑出青年科學基金支持

22) 2000年入選教育部骨幹教師支持計劃

23) 1993年獲教育部霍英東青年教師基金

代表性論文

（一）棉花基因組及進化研究

1. Wang M, Tu L, Yuan D, Zhu, Shen C, Li J, Liu F, Pei L, Wang P, Zhao G, Ye Z, Huang H, Yan F, Ma Y, Zhang L, Liu M, You J, Yang Y, Liu Z, Huang F, Li B, Qiu P, Zhang Q, Zhu L, Jin S, Yang X, Min L, Li G, Chen LL, Zheng H, Lindsey K*, Lin Z*, Udall JA*, Zhang X*. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nature Genetics, 2019, 51(2):224-229 IF= 27.603

2. Wang M, Tu L, Lin M, Lin Z, Wang P, Yang Q, Ye Z, Shen C, Li J, Zhang L, Zhou X, Nie X, Li Z, Guo K, Ma Y, Huang C, Jin S, Zhu L, Yang X, Min L, Yuan D, Zhang Q, Lindsey K* , Zhang X*. Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication. Nature Genetics, 2017, 49(4):579-587 IF= 27.603

3. Li X, Jin X, Wang H, Zhang X, and Lin Z*. Structure, evolution, and comparative genomics of tetraploid cotton based on a high-density genetic linkage map. DNA Research, 2016, 23 (3): 283-293 IF=4.009

4. Yuan D, Tang Z, Wang M, Gao W, Tu L, Jin X, Chen L, He Y, Zhang L, Zhu L, Li Y, Liang Q, Lin Z, Yang X, Liu N, Jin S, Lei Y, Ding Y, Li G, Ruan X, Ruan Y*, Zhang X*. The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres. Scientific Reports, 2015, 5: 17662 IF= 3.998

（二）棉花纖維發育與品質形成

1.Li Z, Wang P, You C, Yu J, Zhang X, Yan F, Ye Z, Shen C, Li B, Guo K, Liu N, Thyssen GN, Fang DD, Lindsey K, Zhang X, Wang M*, Tu L*. Combined GWAS and eQTL analysis uncovers a genetic regulatory network orchestrating the initiation of secondary cell wall development in cotton. New Phytologiust, 2020, 226(6):1738-1752 IF= 8.512

2.Wang M, Wang P, Liang F, Ye Z, Li J, Shen C, Pei L, Wang F, Hu J, Tu L, Lindsey K, He D*, Zhang X*. A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation. New Phytologist, 2018, 217(1):163-178 IF= 8.512

3.Hu H, Wang M, Ding Y, Zhu S, Zhao G, Tu L*, Zhang X. Transcriptomic repertoires depict the initiation of lint and fuzz fibers in cotton (Gossypium hirsutum L.). Plant Biotechnology Journal, 2018, 16(5):1002-1012 IF= 8.154

4.Wang M, Wang P, Lin M*, Ye Z, Li G, Tu L, Shen C, Li J, Yang Q*, Zhang X*. Evolutionary dynamics of 3D genome architecture following polyploidization in cotton. Nature Plants, 2018, 4(2):90-97 IF=13.256

5.Huang C, Nie X, Shen C, You C, Li W, Zhao W, Zhang X* and Lin Z*. Population structure and genetic basis of the agronomic traits of Upland cotton in China revealed by a genome-wide association study using high-density SNPs. Plant Biotechnology Journal, 2017, 15, 1374-1386 IF= 8.154

6.Hu H, He X, Tu L, Zhu L, Zhu S, Ge Z, Zhang X*. GhJAZ2 negatively regulates cotton fiber initiation by interacting with the R2R3-MYB transcription factor GhMYB25-like. Plant Journal, 2016, 88(6):921-935 IF= 6.141

7.Wang M, Wang P, Tu L, Zhu S, Zhang L, Li Z, Zhang Q, Yuan D and Zhang X*. Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation. Nucleic Acids Research, 2016, 44(9):4067-4079 IF=11.501

8.Wang M, Yuan D, Tu L, Gao W, He Y, Hu H, Wang P, Liu N, Lindsey K, Zhang X*. Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.). New Phytologist, 2015, 207(4):1181-1197 IF= 8.512

9.Liu N, Tu L, Tang W, Gao W, Lindsey K, Zhang X*. Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense. Plant Journal, 2014, 80(2):331-344 IF= 6.141

10.Tang W, Tu L, Yang X, Tan J, Deng F, Hao J, Guo K, Lindsey K, Zhang X*. The calcium sensor GhCaM7 promotes cotton fiber elongation by modulating reactive oxygen species (ROS) production. New Phytologist, 2014, 202(2):509-520 IF= 8.512

11.Tan J, Tu L, Deng F, Hu H, Nie Y, Zhang X*. A genetic and metabolic analysis revealed that cotton fiber cell development was retarded by flavonoid naringenin. Plant Physiology, 2013, 162(1):86-95 IF=6.902

12.Hao J, Tu L, Hu H, Tan J, Deng F, Tang W, Nie Y, Zhang X*. GbTCP, a cotton TCP transcription factor, confers fibre elongation and root hair development by a complex regulating system. Journal of Experimental Botany, 2012, 63(17):6267-6281 IF=5.908

13.Deng F, Tu L, Tan J, Li Y, Nie Y, Zhang X*. GbPDF1 is involved in cotton fiber initiation via the core cis-element HDZIP2ATATHB2. Plant Physiology, 2012, 158(2):890-904 IF=6.902

（三）棉花抗逆機制研究

1.Wang Q, Du X, Zhou Y, Xie L, Bie S, Tu L, Zhang N, Yang X, Xiao S*, Zhang X*. The β-ketoacyl-CoA synthase GhKCS13 regulates the cold response in cotton by modulating lipid and oxylipin biosynthesis. Journal of Experimental Botany, 2020, eraa254 IF=5.908

2.Ma Y, Min L*, Wang M, Wang C, Zhao Y, Li Y, Fang Q, Wu Y, Xie S, Ding Y, Su X, Hu Q, Zhang Q, Li X, Zhang X*. Disrupted genome methylation in response to high temperature has distinct affects on microspore abortion and anther indehiscence. Plant Cell, 2018, 30(7):1387-1403 IF= 9.618

3.Hu Q, Min L, Yang X, Jin S, Zhang L, Li Y, Ma Y, Qi X, Li D, Liu H, Lindsey K, Zhu L*, Zhang X*. Laccase GhLac1 modulates broad-spectrum biotic stress tolerance via manipulating phenylpropanoid pathway and jasmonic acid synthesis. Plant Physiology, 2018, 176(2):1808-1823 IF=6.902

4.Hu Q, Zhu L, Zhang X, Guan Q, Xiao S, Min L, Zhang X*. GhCPK33 negatively regulates defense against Verticillium dahliae by phosphorylating GhOPR3. Plant Physiology, 2018,178(2), 876-889 IF=6.902

5.Zhang L, Wang M, Li N, Wang H, Qiu P, Pei L, Xu Z, Wang T, Gao E, Liu J, Liu S, Hu Q, Miao Y, Lindsey K, Tu L, Zhu L, Zhang X*. Long non-coding RNAs involve in resistance to Verticillium dahliae, a fungal disease in cotton. Plant Biotechnology Journal, 2018, 16(6):1172-1185 IF= 8.154

6.Xu L, Zhang W, He X, Liu M, Zhang K, Shaban M, Sun L, Zhu J, Luo Y, Yuan D, Zhang X, Zhu L*. Functional characterization of cotton genes responsive to Verticillium dahliae through bioinformatics and reverse genetics strategies. Journal of Experimental Botany, 2014, 65(22):6679-6692 IF=5.908

7.Sun L, Zhu L, Xu L, Yuan D, Min L, Zhang X*. Cotton cytochrome P450 CYP82D regulates systemic cell death by modulating the octadecanoid pathway. Nature Communications, 2014, 5:5372 IF=12.121

8.Li C, He X, Luo X, Xu L, Liu L, Min L, Jin L, Zhu L*, Zhang X. Cotton WRKY1 mediates the plant defense-to-development transition during infection of cotton by Verticillium dahliae by activating JASMONATE ZIM-DOMAIN1 expression. Plant Physiology, 2014, 166(4):2179-2194 IF=6.902

9.Min L, Li Y, Hu Q, Zhu L, Gao W, Wu Y, Ding Y, Liu S, Yang X, Zhang X*. Sugar and auxin signaling pathways respond to high temperature stress during anther development as revealed by transcript profiling analysis in cotton. Plant Physiology, 2014, 164(3):1293-1308 IF=6.902

10.Gao W, Long L*, Zhu L, Xu L, Gao W, Sun L, Liu L, Zhang X*. Proteomic and virus-induced gene silencing (VIGS) analyses reveal that Gossypol, Brassinosteroids and Jasmonic acid contribute to the resistance of cotton to Verticillium dahliae. Molecular Cellular Proteomics, 2013, 12(12):3690-3703 IF=4.870

11.Min L, Zhu L, Tu L, Deng F, Yuan D, Zhang X*. Cotton GhCKI disrupts normal male reproduction by delaying tapetum programmed cell death via inactivating starch synthase. Plant Journal, 2013, 75(5):823-835 IF= 6.141

12.Xu L, Zhu L, Tu L, Liu L, Yuan D, Jin L, Long L and Zhang X*. Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry. Journal of Experimental Botany, 2011, 62(15):5607-5621 IF=5.908

（四）棉花基因編輯技術的開發與創新

1.Li B, Liang S, Alariqi M, Wang F, Wang G, Wang Q, Xu Z, Yu, Zafar MN, Sun L, Si, Yuan D, Guo W, Wang Y, Lindsey K, Zhang X*, Jin S*。The application of temperature sensitivity CRISPR/LbCpf1 (LbCas12a) mediated genome editing in allotetraploid cotton (G. hirsutum) and creation of nontransgenic, gossypol-free cotton. Plant Biotechnology Journal, 2020, https://doi.org/10.1111/pbi.13470. IF= 8.154

2.Manghwar H, Li B, Ding X, Hussain A, Lindsey K, Zhang X*, Jin S*. CRISPR/Cas Systems in Genome Editing: Methodologies and Tools for sgRNA Design, Off-Target Evaluation, and Strategies to Mitigate Off-Target Effects. Advanced Science (Weinh), 2020, 7(6):1902312 IF= 15.840

3.Manghwar H, Lindsey K, Zhang X*, Jin S*. CRISPR/Cas System: Recent Advances and Future Prospects for Genome Editing. Trends in Plant Science. 2019, 24(12):1102-1125 IF= 14.416

4.Li J, Manghwar H, Sun L, Wang P, Wang G, Sheng H, Zhang J, Liu H, Qin L, Rui H, Li B, Lindsey K, Daniell H, Jin S*, Zhang X. Whole genome sequencing reveals rare off-target mutations and considerable inherent genetic or/and somaclonal variations in CRISPR/Cas9-edited cotton plants. Plant Biotechnology Journal. 2019,17(5), 858-868 IF= 8.154

5.Wang PC, Zhang J, Sun L, Ma YZ, Xu J, Liang SJ, Deng JW, Tan JF, Zhang Q, Tu LL, Daniell Henry, Jin SX*, Zhang XL*. High efficient multisites genome editing in allotetraploid cotton (Gossypium hirsutum) using CRISPR/Cas9 system. Plant Biotechnology Journal, 2018, 16(1):137-150 IF= 8.154

（五）棉花體細胞胚發育機制研究

1.Xu J, Yang X*, Li B, Chen L, Min L, Zhang X*. GhL1L1 affects cell fate specification by regulating GhPIN1-mediated auxin distribution. Plant Biotechnology Journal, 2019, 17(1):63-74 IF= 8.154

2.Zhou T, Yang X, Guo K, Deng J, Xu J, Gao W, Lindsey K, Zhang X*. ROS homeostasis regulates somatic embryogenesis via the regulation of auxin signaling in cotton. Molecular Cellular Proteomics, 2016, 15(6):2108-2124 IF=4.870

3.Min L, Hu Q, Li Y, Xu J, Ma Y, Zhu L, Yang X, Zhang X*. LEAFY COTYLEDON1-CASEIN KINASE I-TCP15-PHYTOCHROME INTERACTING FACTOR4 network regulates somatic embryogenesis by regulating auxin homeostasis. Plant Physiology, 2015, 169(4): 2805-2821 IF=6.902

4.Jin F, Hu L, Yuan D, Xu J, Gao W, He L, Yang X, Zhang X*. Comparative transcriptome analysis between somatic embryos and zygotic embryos in cotton: evidence for stress response functions in somatic embryo development. Plant Biotechology Journal, 2013, 12(2):161-173 IF=6.1

5.Yang X, Wang L, Yuan D, Lindsey K and Zhang X*. Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. Journal of Experimental Botany, 2013, 64(6):1521-1536 IF=5.908

6.Hu L, Yang X, Yuan D, Zeng F, Zhang X*. GhHmgB3 deficiency deregulates proliferation and differentiation of cells during somatic embryogenesis in cotton. Plant Biotechnology Journal, 2011, 9: 1038-1048 IF= 8.154

7.Yang X, Zhang X*. Regulation of somatic embryogenesis in higher plants. Critical Review in Plant Science, 2010, 29(1):36-57 IF=6.235

8.Yang X, Tu L, Zhu L, Fu L, Min L, Zhang X*. Expression profile analysis of genes involved in cell wall regeneration during protoplast culture in cotton by suppression subtractive hybridization and macroarray. Journal of Experimental Botany, 2008, 59(13):3661-3674 IF=5.908

9.Sun Y, Zhang X*, Nie Y, Guo X, Jin S, Liang S. Production and characterization of somatic hybrids between upland cotton (Gossypium hirsutum) and wild cotton (G. klotzschianum Anderss) via electrofusion. Theoretical and  Applied Genetics, 2004, 109(3):472-479 IF=4.439

主編參編著作

1) Genome Sequencing, In: Cotton, 2^nd edition. 2015, edited by David D. Fang and Richard G. Percy. American Society of Agronomy, Crop Science Society of America, and Soil Science of America. p. 289-302

2) 《植物生物技術》第二版主編，2012，科學出版社

3) Developmental and molecular aspects of somatic embryogenesis (nonzygotic embryogenesis), In: Plant Tissue Culture, Development, and Biotechnology, 2011, Robert N. Trigiano and Dennis J. Gray Eds., CRC Press, p. 307-325

4) Cotton Biotechnology: Challenge the Future for Cotton Improvement, In: Biotechnology in Crop Improvement, 2008, GP Rao (ed.), Studium Press, LLC, Houstan, Texas, USA. p. 241-301

5) 《遺傳學》副主編，2007，科學出版社

6) 《湖北棉花》參編，2004，中國農業出版社

7) 《作物育種學總論》副主編，2003，農業出版社

8) 《中國棉花遺傳育種學》參編，2003，山東科學技術出版社

9) 《植物細胞組織培養》參編，2002，中國農業大學出版社

培育審定的棉花品種

1)華雜棉1号   鄂審棉2005002号

2)華雜棉2号   豫審棉2005009号

3)華惠103     贛審棉2006008号（與惠民種業合作）

4)華雜棉H318  國審棉2009018号

5)華雜棉4号   贛審棉2009001号

6)華棉3109    鄂審棉2014006号

7)華棉3097    鄂審棉2017005

8)華雜棉H116  贛審棉20180001

9)華雜棉H922  贛審棉20180002

10)華雜棉H834  鄂審棉2019003

11)華雜棉H922  鄂審棉2019002

12)華棉9153   贛審棉20190003

13)華棉1126   鄂審棉2019006

14)華雜棉H329  鄂審棉2019001

15)華棉2270   贛審棉20200007

16)華雜棉H834 贛審棉20200007

17)華雜棉H116 通過國家棉花專業組初審（2020）

18)華棉8119   通過湖北省初審（2020）

論文列表（中文）：

1. 戴寶生，郭歡樂，尤春源，張獻龍，林忠旭*.棉花陸海雜種标記偏分離染色體上重要農藝性狀的QTL定位, 棉花學報, 2018, 30(6):435-447

2. 張伯陽, 簡逸楠, 李夢, 楊細燕*, 張獻龍. 棉花GhSEDEG38基因調控棉花耐鹽性的功能研究, 77779193永利官网學報, 2018, 37(5): 1-5.

3. 張雲超, 楊細燕, 何良榮, 李樂斌, 周婷, 金芳燕, 張獻龍. 魯棉6号體細胞胚胎發生過程及植株再生, 77779193永利官网學報, 2014, 02: 22-27.

4. 付小勤, 原保忠, 張獻龍, 聶以春, 劉燕, 柯昌煌, 葉聖池. 鉀肥分期施用對棉花産量及構成因素影響, 中國農學通報, 2014, 18: 95-103.

5. 劉琳琳, 張文文, 周易, 苗玉煥, 許蓮, 劉敏, 張坤, 張獻龍, 朱龍付. 棉花與番茄抗棉花黃萎病不依賴于Ve1, 中國科學: 生命科學, 2014, 08: 803-814.

6. 塗禮莉, 譚家福, 郭凱, 李中華, 張獻龍*. 類黃酮代謝途徑與棉花纖維發育, 中國科學:生命科學, 2014, 08: 758-765.

7. 付小勤, 原保忠, 劉燕, 張獻龍, 聶以春. 鉀肥施用量和施用方式對棉花生長及産量和品質的影響, 農學學報, 2013, 02: 6-11.

8. 楊國正, 王德鵬, 聶以春, 張獻龍. 鉀肥用量對棉花生物量和産量的影響(英文), 作物學報, 2013, 05: 905-911.

9. 惠慧, 郭小平, 朱龍付, 張獻龍. 落葉型棉花黃萎病菌的緻病力分化, 植物保護學報, 2013, 05: 445-449.

10. 朱華國, 張獻龍, 金雙俠, 劉冠澤. 兩種常用激素組合下棉花體細胞胚胎發生過程的組織學觀察, 棉花學報, 2012, 02: 159-166.

11. 白靜, 聶以春, 林忠旭, 郭小平, 張獻龍, 王斌, 劉傳祥. 棉花雜交種SSR核心引物的篩選與評價, 棉花學報, 2012, 03: 207-214.

12. 徐理, 朱龍付, 張獻龍*. 棉花抗黃萎病機制研究進展, 作物學報, 2012, 09: 1553-1560.

13. 劉燕, 原保忠, 張獻龍, 周歡, 彭龍. 整枝與化控對棉花産量和品質的影響, 中國棉花, 2012, 11: 10-12.

14. 徐澤俊, 聶以春, 張獻龍, 郭小平, 吳家和.轉雙價抗蟲基因棉花的主要農藝性狀的遺傳變異, 植物遺傳資源學報, 2011, 01: 125-130.

15. 楊國正, 張獻龍, 黎青, 段銀庭, 張羽, 劉任華, 劉道紅, 曾武峰. 華雜棉H318極産探索及其關鍵配套栽培技術. 中國棉花, 2011, 01: 23-24.

16. 張獻龍*. 湖北省棉花育種“十二五”研究構思, 中國棉花, 2011, 03: 5-7.

17. 彭龍, 原保忠, 周歡, 崔穎, 張獻龍. 鉀對棉花生長發育生理特性以及産量品質的影響研究, 中國農學通報, 2011, 12: 227-231.

18. 王德鵬, 祝珍珍, 陳求柱, 盧懷玉, 李召虎, 楊國正, 張獻龍. 華雜棉H318 F1高産栽培技術, 湖北農業科學, 2011, 10: 1961-1963.

19. 聶以春, 張獻龍, 郭小平. 轉基因抗蟲雜交棉-華雜棉4号, 江西棉花, 2010, 01: 49-50.

20. 聶以春, 張獻龍, 郭小平. 高産抗蟲雜交棉-華雜棉H318, 中國棉花, 2010, 02: 26.

21. 李雪林, 劉冠澤, 聶以春, 郭小平, 張獻龍*. SNAC1基因作為篩選标記基因用于棉花的遺傳轉化, 棉花學報, 2010, 01: 36-41.

22. 朱再清, 張獻龍. 我國轉基因抗蟲棉推廣與生産優勢區域變化實證分析, 77779193永利官网學報(社會科學版), 2010, 02: 12-17.

23. 宋俊喬, 孫培均, 張霞, 張獻龍, 聶以春, 郭小平, 朱龍付. 棉仁高油分材料篩選及其脂肪酸發育分析, 棉花學報, 2010, 04: 291-296.

24. 餘渝, 張豔欣, 林忠旭, 張獻龍. 棉花種間BC1群體偏分離的遺傳剖析(英文), 作物學報, 2010, 10: 1657-1665.

25. 曹景林, 朱龍付, 譚家福, 鄧鋒林, 李允靜, 郝娟, 徐士成, 張獻龍*. 适用于蛋白質雙向電泳的棉花胚性培養物蛋白質提取技術, 棉花學報, 2009, 01: 3-9.

26. 李雪林, 林忠旭, 聶以春, 郭小平, 張獻龍*. 鹽脅迫下棉花基因組DNA表觀遺傳變化的MSAP分析, 作物學報, 2009, 04: 588-596.

27. 王振宇, 馬奇祥, 郭小平, 張獻龍. 試驗地點選擇對棉花産量鑒别的影響, 河南農業科學, 2009，04: 55-58.

28. 張培培, 王夏青, 餘楊, 餘渝, 林忠旭, 張獻龍. 首批海島棉基因組來源的微衛星标記的分離、評價和定位, 作物學報, 2009, 06: 1013-1020.

29. 付莉莉, 楊細燕, 張獻龍, 王志偉, 馮常輝, 劉傳祥, 江培勇, 張金龍. 棉花原生質體“供- 受體”雙失活融合産生種間雜種植株及其鑒定, 科學通報, 2009, 15: 2219-2227.

30. 林忠旭, 馮常輝, 郭小平, 張獻龍. 陸地棉産量、纖維品質相關性狀主效QTL和上位性互作分析, 中國農業科學, 2009, 09: 3036-3047.

31. 餘渝, 王夏青, 馮常輝, 林忠旭, 張獻龍*. 棉花纖維特異/優勢表達基因的染色體定位, 棉花學報, 2009, 06: 435-441.

32. 曹景林, 張獻龍*, 金雙俠, 楊細燕, 朱華國, 付莉莉. 棉花高效體細胞胚發生及同步控制培養體系研究, 作物學報, 2008, 02: 224-231.

33. 朱華國, 塗禮莉, 金雙俠, 徐理, 譚家福, 鄧鋒林, 張獻龍*. 棉花細胞初始脫分化的基因差異表達分析, 科學通報, 2008, 20: 2483-2492.

34. 餘渝, 王志偉, 馮常輝, 張豔欣, 林忠旭, 張獻龍. 草棉EST-SSRs的遺傳評價, 作物學報, 2008, 12: 2085-2091.

35. 王江林, 胡征國, 郭小平, 高敏, 聶以春, 張獻龍. 棉花新型D8胞質雄性不育的細胞質效應研究, 棉花學報, 2008, 02: 83-87.

36. 周志林, 聶以春, 張獻龍, 胡婷婷. 棉花體細胞培養中染色體的變異, 江蘇農業學報, 2008, 02: 126-129.

37. 李武, 倪薇, 林忠旭, 張獻龍. 海島棉遺傳多樣性的SRAP标記分析, 作物學報, 2008, 05: 893- 898.

38. 林忠旭, 王錦峰, 張獻龍*. 瑟伯氏棉和異常棉的陸地棉導入系的EST-SSR和gSSR分析(英文), 棉花學報, 2008, 04: 243-248.

39. 謝德意, 金雙俠, 郭小平, 張獻龍*. 長江和黃河流域棉區棉花品種體細胞胚胎發生和植株再生比較研究, 作物學報, 2007, 03: 394-400.

40. 謝德意, 金雙俠, 郭小平, 張獻龍*. 棉花胚性愈傷組織的轉化及轉基因胚狀體的有效萌發與成苗技術研究, 作物學報，2007, 05: 751-756.

41. 李武, 林忠旭, 張獻龍*. 亞洲棉種内群體異常偏分離的分子标記檢測(英文), 遺傳學報, 2007, 07: 634- 640.

42. 金雙俠, 韓傑, 劉小雲, 劉冠澤, 王一娴, 唐文鑫, 張獻龍*. SDS-蛋白酶法分離棉花cpDNA及psbA基因啟動子、終止子克隆, 分子植物育種, 2007, 05: 683-689.

43. 張豔欣, 林忠旭, 李武, 塗禮莉, 聶以春, 張獻龍*. 海島棉EST- SSR引物的開發與應用研究, 科學通報, 2007, 15: 1779-1787.

44. 塗禮莉, 張獻龍*, 劉迪秋, 金雙俠, 曹景林, 朱龍付, 鄧鋒林, 譚家福, 張存斌. 棉花纖維發育和體細胞胚發生過程中實時定量PCR内對照基因的篩選, 科學通報, 2007, 20: 2379-2385.

45. 周小鳳, 張碧瑤, 劉冠澤, 高巍, 餘渝, 鄧福軍, 李保成, 孔憲輝, 張獻龍, 金雙俠. 新疆棉花高體細胞胚胎發生能力基因型的篩選, 分子植物育種, 2007, 06: 819-826.

46. 王國英, 郭小平, 張獻龍. 4個陸地棉雄性核不育系育性穩定性觀察, 77779193永利官网學報, 2006, 04: 351-354.

47. 郭小平, 趙元明, 吳家和, 張獻龍*, 聶以春. 棉花Bt轉基因品系的配合力和雜種優勢表現(英文), 棉花學報, 2006, 05: 304-308.

48. 賀道華, 張獻龍*. 數量性狀由表型變異到基因發現的研究進展, 遺傳, 2006, 12: 1613- 1618.

49. 夏啟中, 張明菊, 張獻龍, 郭小平. 高濃度細胞分裂素誘導棉花懸浮細胞程序性死亡, 77779193永利官网學報, 2005，04: 334-338.

50. 王紅梅, 張獻龍*, 賀道華, 林忠旭, 聶以春, 李運海, 陳偉. 陸地棉對黃萎病抗性的分子标記研究, 植物病理學報, 2005, 04: 333-339.

51. 夏啟中, 張獻龍*, 聶以春, 郭小平, 朱龍付. 在自然衰老和誘導條件下棉花懸浮細胞程序性死亡的發生, 實驗生物學報, 2005, 04: 33-38.

52. 朱龍付, 塗禮莉, 曾範昌, 劉迪秋, 張獻龍*. 一種适合于cDNA文庫構建的高質量棉花RNA的簡單抽提法(英文), 作物學報, 2005, 12: 1657-1659.

53. 金雙俠, 張獻龍*, 聶以春, 郭小平, 孫玉強, 黃超, 梁紹光. 啟動子誘捕在棉花基因組中的功能分析(英文), 遺傳學報, 2005, 12: 1266-1274.

54. 夏啟中, 張獻龍*, 聶以春, 郭小平. 棉花胚性細胞懸浮系的建立及其影響因素分析, 棉花學報, 2005, 01: 12-17.

55. 聶以春, 張獻龍, 楊細燕, 郭小平. 抗蟲雜交棉的光合及經濟性狀的優勢及配合力研究,77779193永利官网學報, 2005, 01: 5-9.

56. 夏啟中, 吳家和, 張獻龍*. 與植物超敏反應(HR)相關的細胞編程性死亡, 77779193永利官网學報, 2005, 01: 97-103.

57. 夏啟中, 張獻龍*, 聶以春, 郭小平. 撤除外源生長素誘發棉花胚性懸浮細胞程序性死亡,植物生理與分子生物學學報, 2005, 01: 78-84.

58. 朱龍付, 塗禮莉, 張獻龍*, 聶以春, 郭小平, 夏啟中. 黃萎病菌誘導的海島棉抗病反應的SSH文庫構建及分析, 遺傳學報, 2005, 05: 528-532.

59. 吳家和, 張獻龍*, 羅曉麗, 聶以春, 田穎川, 陳正華. 轉幾丁質酶和葡聚糖酶基因棉花的獲得及其對黃萎病的抗性, 遺傳學報, 2004, 02: 183-188.

60. 王紅梅, 張獻龍*, 李運海, 聶以春. 陸地棉黃萎病抗性遺傳分析, 棉花學報, 2004, 02: 84-88.

61. 曹湊貴, 張獻龍, 傅廷棟. 改造傳統農學專業創新人才培養模式, 中國農業教育, 2004, 01: 21-23.

62. 賀道華, 林忠旭, 張獻龍*, 聶以春, 郭小平. 陸地棉纖維品質遺傳基礎的分子标記剖析, 棉花學報, 2004, 03: 131-136.

63. 林忠旭, 張獻龍*, 聶以春. 新型标記SRAP在棉花F2分離群體及遺傳多樣性評價中的适用性分析, 遺傳學報, 2004, 06: 622-626.

64. 張獻龍*, 孫玉強, 吳家和, 金雙俠, 聶以春, 郭小平. 棉花細胞工程及新種質創造, 棉花學報, 2004, 06: 368-373.

65. 聶以春, 張獻龍, 郭小平, 蔡明曆. 轉Bt基因抗蟲雜交棉的光合性狀遺傳分析, 作物學報, 2004, 11: 1173-1175.

66. 朱龍付, 張獻龍*. RNAi及其在植物遺傳改良中的應用, 77779193永利官网學報, 2004, 04: 472-477.

67. 李定國, 聶以春, 張獻龍. 陸地棉棕色纖維色澤的遺傳分析, 77779193永利官网學報, 2004, 06: 606-609.

68. 林忠旭, 張獻龍*, 聶以春, 賀道華, 吳茂清. 棉花SRAP遺傳連鎖圖構建, 科學通報, 2003, 15: 1676-1679.

69. 高玉千, 聶以春, 張獻龍. 棉花抗黃萎病基因的QTL定位, 棉花學報, 2003, 02: 73-78.

70. 李惠英, 張獻龍*, 聶以春. 珂字201胚性愈傷組織cDNA文庫的構建和分析(英文), 棉花學報, 2003, 04: 235-237.

71. 吳家和, 張獻龍*, 羅曉麗, 肖娟麗. 兩個陸地棉體細胞胚胎發生新品系的選育, 棉花學報, 2003, 04: 254-256.

72. 李惠英, 張獻龍*. 陸地棉體細胞胚胎發生過程中的mRNA差異顯示分析, 棉花學報, 2003, 05: 264-268.

73. 吳茂清, 張獻龍*, 聶以春, 賀道華. 四倍體栽培棉種産量和纖維品質性狀的QTL定位(英文), 遺傳學報, 2003, 05: 443-452.

74. 吳家和, 張獻龍*, 羅曉麗, 田穎川. 轉新型雙抗蟲基因棉花的遺傳分析, 遺傳學報, 2003, 07: 631-636.

75. 塗禮莉, 張獻龍*, 朱龍付, 聶以春, 郭小平. 海島棉NBS類型抗病基因類似物的起源、多樣性及進化, 遺傳學報, 2003, 11: 1071-1077.

76. 吳家和, 田穎川, 羅曉麗, 郭洪年, 石躍進, 陳曉英, 賈燕濤, 肖娟麗, 張獻龍*. 轉兩類抗蟲基因棉花優良純合品系的選育, 中國農業科學, 2003, 06: 651-656.

77. 朱龍付, 張獻龍*, 聶以春. 利用RAPD和SSR标記分析陸地棉種質資源的遺傳多樣性, 農業生物技術學報, 2003, 05: 450-455.

78. 吳家和, 張獻龍*, 聶以春. 棉花體細胞增殖和胚胎發生中的細胞程序性死亡, 植物生理與分子生物學學報, 2003, 06: 515-520.

79. 張美冬, 詹先進, 張獻龍. 彩色棉品種資源的RAPD多态性分析, 77779193永利官网學報, 2003, 05: 427- 430.

80. 左開井, 張獻龍, 聶以春, 劉金蘭, 孫濟中. 轉基因抗蟲棉Bt基因插入區堿基組成分析, 遺傳學報, 2002, 08: 735-740.

81. 徐秋華, 張獻龍*, 聶以春, 馮純大. 我國棉花抗枯萎病品種的遺傳多樣性分析, 中國農業科學, 2002, 03: 272-276.

82. 聶以春, 周肖榮, 張獻龍. 轉基因抗蟲棉的産量、品質及抗蟲性比較研究, 植物遺傳資源科學, 2002, 3(4): 8-12.

83. 朱龍付, 張獻龍*, 聶以春, 吳家和. 轉基因抗蟲棉品種(系)的遺傳多樣性初步研究, 77779193永利官网學報, 2002, 05: 401-405.

84. 陳妹幼, 聶以春, 張獻龍*. 轉化棉花胚性愈傷可以有效縮短轉基因周期, 77779193永利官网學報, 2002, 05: 406-408.

85. 王武, 聶以春, 張獻龍*, 孫濟中. 轉基因抗蟲組合在棉花雜種優勢利用中增産原因剖析, 77779193永利官网學報, 2002, 05: 419-424.

86. 王武, 張獻龍*, 孫濟中, 聶以春. 轉基因抗蟲組合F2代群體農藝性狀變異及其利用價值評估, 棉花學報, 2002, 01: 8-12.

87. 聶以春, 張獻龍, 楊德華. 陸地棉×辣根棉後代主要性狀的遺傳變異, 棉花學報, 2002，04: 219-222.

88. 陳妹幼, 張獻龍*, 聶以春, 吳家和. 陸地棉體細胞再生植株技術的改進研究, 棉花學報, 2002, 06: 344-347.

89. 羅曉麗, 吳家和, 肖娟麗, 石躍進, 張獻龍. 非珂字棉系統陸地棉的轉化效率, 棉花學報, 2002, 06: 365-367.

90. 徐秋華, 張獻龍*, 馮純大, 聶以春. 河北省和中棉所育成陸地棉品種的遺傳多樣性分析,棉花學報, 2001, 04: 238-242.

91. 徐秋華, 張獻龍*, 聶以春. 長江、黃河流域兩棉區陸地棉品種的遺傳多樣性比較研究, 遺傳學報, 2001, 07: 683-690.

92. 聶以春, 張獻龍, 雷朝亮. 棉花種間雜種後代抗紅蜘蛛特性鑒定初報, 植物遺傳資源科學, 2001, 01: 40-43.

93. 左開井, 孫濟中, 張獻龍, 聶以春, 劉金蘭, 馮純大. 利用RFLP、SSR和RAPD标記構建陸地棉分子标記連鎖圖(英文), 77779193永利官网學報, 2000, 03: 190-193.

94. 聶以春, 左開井, 張獻龍, 馮純大. RAPD标記分析棉花種間雜種後代的遺傳相似性, 77779193永利官网學報, 2000, 06: 523-527.

95. 聶以春, 左開井, 張獻龍, 馮純大, 劉金蘭. RAPD标記在棉屬種間雜種後代檢測中的應用, 中國農業科學, 2000, 05: 25-29.

96. 張獻龍, 姚明鏡, 史平臣, 董新國. 陸地棉抗枯萎病細胞系再生株後代的抗性鑒定, 中國棉花, 1998, 07: 8-9.

97. 聶以春, 劉金蘭, 張獻龍. 不同來源棉花種質材料對紅鈴蟲的抗性初報, 中國棉花, 1998, 12: 20-21.

98. 呂複兵, 張獻龍, 劉金蘭. 陸地棉原生質體培養與植株再生, 華北農學報, 1999, 01: 73-78.

99. 董新國, 張獻龍*, 聶以春, 陳志賢, 吳家和. 陸地棉花藥培養的解剖學和細胞學研究, 作物學報, 1999, 06: 782-785.

100. 聶以春, 劉金蘭, 張獻龍. 新合成的棉花遺傳資源-異源四倍體(亞洲棉×司笃克氏棉)初報, 作物品種資源, 1999, 03: 24.

101. 張獻龍, 孫濟中. 棉花生物技術研究概況Ⅰ.棉花組織培養與基因工程研究, 武漢植物學研究, 1999, 03: 68-75.

102. 張獻龍, 孫濟中. 棉花生物技術研究概況Ⅱ.棉花分子生物學研究, 武漢植物學研究, 1999, 04: 362-370.

103. 董新國, 張獻龍*, 陳志賢, 聶以春, 吳家和. 陸地棉花藥愈傷組織的誘導和繼代培養, 武漢植物學研究, 1999, 03: 83-87.

104. 張獻龍*, 林雙龍, 呂複兵, 董新國. 陸地棉微莖尖培養影響因素的研究, 77779193永利官网學報, 1996, 03: 210-214.

105. 張獻龍, 李濤, 孫濟中. 抗生素對棉花愈傷組織誘導和生長的影響, 77779193永利官网學報, 1996, 02: 123-126.

106. 聶以春, 劉金蘭, 張獻龍. 人工合成的棉屬異源四倍體(亞洲棉×司笃克氏棉)種質的胚胎發育, 77779193永利官网學報, 1997, 06: 5-9.

107. 張家明, 孫雪飄, 鄭學勤, 張獻龍, 趙燕, 劉金蘭, 孫濟中. 陸地棉愈傷誘導及胚胎發生能力的遺傳分析, 中國農業科學, 1997, 03: 36-43.

108. 王武, 李秀蘭, 張獻龍, 劉金蘭. 油菜素内酯在棉花組織培養中的應用研究Ⅰ．油菜素内酯對陸地棉體細胞胚胎發生和根器官發生的影響, 棉花學報, 1994, 02: 83-88.

109. 張獻龍, 姚明鏡, 劉金蘭, 孫濟中. 陸地棉枯萎病抗源的體外篩選研究Ⅰ.抗性細胞系的篩選及植株再生, 棉花學報, 1994, 03: 178-183.

110. 姚明鏡, 張獻龍, 劉金蘭, 孫濟中. 棉花黃萎病菌培養濾液對棉幼苗、種子發芽及離體培養物的毒害作用, 棉花學報, 1994, 03: 184-188.

111. 張家明, 孫濟中, 劉金蘭, 張獻龍. 陸地棉體細胞植株再生及其移栽技術研究, 作物學報, 1994, 02: 210-216.

112. 姚明鏡, 張獻龍, 劉金蘭, 孫濟中. 陸地棉抗黃萎病細胞系幾個生理生化指标的測定, 77779193永利官网學報, 1995, 04: 338-343.

113. 姚明鏡, 張獻龍, 劉金蘭, 孫濟中. 陸地棉黃萎病體細胞抗性突變體的篩選研究, 棉花學報, 1995, 01: 59-65.

114. 張獻龍, 姚明鏡, 劉金蘭, 孫濟中. 陸地棉抗性細胞系耐枯萎病菌毒素的生化機制研究, 中國農業科學, 1995, S1: 150-156.

115. 張獻龍. 棉花體細胞培養研究進展, 湖北農業科學, 1991, 04: 37-40.

116. 張獻龍, 孫濟中, 劉金蘭. 陸地棉體細胞胚胎發生與植株再生, 遺傳學報, 1991, 05: 461-467.

117. 張獻龍, 王武, 劉金蘭, 孫濟中. 不同激素誘導陸地棉體細胞胚胎發生的效應, 77779193永利官网學報, 1991, 03: 247-251.

118. 張獻龍, 孫濟中, 劉金蘭. 陸地棉品種“珂字201”胚性與非胚性愈傷組織生化代謝産物的比較研究, 作物學報, 1992, 03: 176-182.

119. 王武, 張獻龍, 劉金蘭. 油菜素内酯對陸地棉體細胞胚胎發生的影響, 植物生理學通訊, 1992, 01: 15- 18.

120. 張獻龍, 姚明鏡, 劉金蘭, 孫濟中. 棉花枯萎病菌毒素對種子發芽和組織生長的毒害作用, 77779193永利官网學報, 1993, 04: 317-322.

121. 張獻龍, 張家明, 姚明鏡, 孫濟中, 劉金蘭. 棉花體細胞培養及其應用基礎研究, 77779193永利官网學報, 1993, 05: 421-426.

122. 張獻龍, 孫濟中, 劉金蘭. 棉屬遠緣雜種胚珠離體培養研究, 中國農業科學, 1988, 06: 53-58.

123. 張獻龍. 棉花胚珠培養中的兩種關系, 中國棉花, 1988, 03: 9-11.

124. 張獻龍, 劉金蘭, 孫濟中. 陸地棉×亞洲棉胚胎在培養條件下的發育研究, 77779193永利官网學報, 1988, 03: 211-215.

論文列表（英文）：

1. Li B, Liang S, Alariqi M, Wang F, Wang G, Wang Q, Xu Z, Yu L, Zafar M, Sun L, Si H, Yuan D, Guo W, Wang Y, Lindsey K, Zhang X*, Jin S*. The application of temperature sensitivity CRISPR/LbCpf1 (LbCas12a) mediated genome editing in allotetraploid cotton (G. hirsutum) and creation of nontransgenic, gossypol-free cotton. Plant Biotechnol J, 2020

2. Wang Q, Alariqi M, Wang F, Li B, Ding X, Rui H, Li Y, Xu Z, Qin L, Sun L, Li J, Zou J, Lindsey K, Zhang X, Jin S*. The application of a heat-inducible CRISPR/Cas12b (C2c1) genome editing system in tetraploid cotton (G.hirsutum) plants. Plant Biotechnol J, 2020

3. Qin L, Li J, Wang Q, Xu Z, Sun L, Alariqi M, Manghwar H, Wang G, Li B, Ding X, Rui H, Huang H, Lu T, Lindsey K, Daniell H, Zhang X, Jin S*. High-efficient and precise base editing of C•G to T•A in the allotetraploid cotton (Gossypium hirsutum) genome using a modified CRISPR/Cas9 system. Plant Biotechnol J, 2020, 18(1):45-56

4. Manghwar H, Li B, Ding X, Hussain A, Lindsey K, Zhang X*, Jin S*. CRISPR/Cas Systems in Genome Editing: Methodologies and tools for sgRNA design, off-target evaluation, and strategies to mitigate off-target effects. Adv Sci (Weinh), 2020, 7(6):1902312

5. Li B, Chen L, Sun W, Wu D, Wang M, Yu Y, Chen G, Yang W, Lin Z, Zhang X, Duan L*, Yang X*. Phenomics-based GWAS analysis reveals the genetic architecture for drought resistance in cotton. Plant Biotechnol J, 2020

6. Li B, Tian Q, Wang X, Han B, Liu L, Kong X, Si A, Wang J, Lin Z, Zhang X, Yu Y*, Yang X*. Phenotypic plasticity and genetic variation of cotton yield and its related traits under water-limited conditions. Crop J, 2020

7. Si H, Liu H, Sun Y, Xu Z, Liang S, Li B, Ding X, Li J, Wang Q, Sun L, Zhang X, Jin S*. Transcriptome and metabolome analysis reveal that oral secretions from Helicoverpa armigera and Spodoptera litura influence wound-induced host response in cotton. Crop J, 2020

8. Li Z, Wang P, You C, Yu J, Zhang X, Yan F, Ye Z, Shen C, Li B, Guo K, Liu N, Thyssen G, Fang D, Lindsey K, Zhang X, Wang M*, Tu L*. Combined GWAS and eQTL analysis uncovers a genetic regulatory network orchestrating the initiation of secondary cell wall development in cotton. New Phytol, 2020, 226(6):1738-1752

9. Deng J, Yang X, Sun W, Miao Y, He L, Zhang X*. The calcium sensor CBL2 and its interacting kinase CIPK6 are involved in plant sugar homeostasis via interacting with tonoplast sugar transporter TST2. Plant Physiol, 2020, 183: 236-249

10. Wang Q, Du X, Zhou Y, Xie L, Bie S, Tu L, Zhang N, Yang X, Xiao S*, Zhang X*. The β-ketoacyl-CoA synthase GhKCS13 regulates the cold response in cotton by modulating lipid and oxylipin biosynthesis. J Exp Bot, 2020, eraa254

11. Chen L, Sun H, Wang F, Yue D, Shen X, Sun W, Zhang X, Yang X*. Genome-wide identification of MAPK cascade genes reveals the GhMAP3K14–GhMKK11–GhMPK31 pathway is involved in the drought response in cotton. Plant Mol Bio, 2020, 103: 211-223

12. Liu N, Wu S, Li Z, Khan A, Hu H, Zhang X, Tu L*. Repression of microRNA 160 results in retarded seed integument growth and smaller final seed size in cotton. Crop J, 2020, 8(4): 602-612

13. Guo K, Li Z, Tian H, Du X, Liu Z, Huang H, Wang P, Ye Z, Zhang X, Tu L*. Cytosolic ascorbate peroxidases (cAPXs) play a critical role in photosynthesis by modulating reactive oxygen species (ROS) level in stomatal guard cell. Front Plant Sci, 2020, 11:446

14. Wang M, Tu L, Yuan D, Zhu, Shen C, Li J, Liu F, Pei L, Wang P, Zhao G, Ye Z, Huang H, Yan F, Ma Y, Zhang L, Liu M, You J, Yang Y, Liu Z, Huang F, Li B, Qiu P, Zhang Q, Zhu L, Jin S, Yang X, Min L, Li G, Chen L, Zheng H, Lindsey K*, Lin Z*, Udall J*, Zhang X*. Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense. Nat Genet, 2019, 51(2):224-229

15. Manghwar H, Lindsey K, Zhang X*, Jin S*. CRISPR/Cas System: Recent Advances and Future Prospects for Genome Editing. Trends Plant Sci. 2019, 24(12):1102-1125

16. Hu L, Xu Z, Wang M, Fan R, Yuan D, Wu B, Li W, Saski C, Daniell H, Wendel J, Lindsey K, Zhang X, Hao C*, Jin S*. The chromosome-scale reference genome of black pepper (Piper nigrum) provides further insight into piperine biosynthesis. Nat Commun, 2019, 10: 4702

17. Li B, Rui H, Li Y, Wang Q, Alariqi M, Qin L, Sun L, Ding X, Wang F, Zou J, Wang Y, Yuan D, Zhang X, Jin S*. Robust CRISPR/Cpf1 (Cas12a)-mediated genome editing in allotetraploid cotton (Gossypium hirsutum). Plant Biotechnol J. 2019, 17(10):1862-1864

18. Li J, Manghwar H, Sun L, Wang P, Wang G, Sheng H, Zhang J, Liu H, Qin L, Rui H, Li B, Lindsey K, Daniell H, Jin S*, Zhang X. Whole genome sequencing reveals rare off-target mutations and considerable inherent genetic or/and somaclonal variations in CRISPR/Cas9-edited cotton plants. Plant Biotechnol J. 2019,17(5), 858-868

19. Zhou Y, Sun L, Wassan GM, He X, Shaban M, Zhang L, Zhu L*, Zhang X. GbSOBIR1 confers Verticillium wilt resistance by phosphorylating the transcriptional factor GbbHLH171 in Gossypium barbadense. Plant Biotechnol J, 2019,17(1), 152-163

20. Li J, Wang M, Li Y, Zhang Q, Lindsey K, Daniell H, Jin S*, Zhang X. Multi-omics analyses reveal epigenomics basis for cotton somatic embryogenesis through successive regeneration acclimation process. Plant Biotechnol J, 2019, 17(2):435-450

21. Xu J, Yang X*, Li B, Chen L, Min L, Zhang X*. GhL1L1 affects cell fate specification by regulating GhPIN1-mediated auxin distribution. Plant Biotechnol J, 2019, 17(1):63-74

22. Xu J, Chen L, Sun H, Wusiman N, Sun W, Li B, Gao Y, Kong J, Zhang D, Zhang X, Xu H*, Yang X*. Crosstalk between cytokinin and ethylene signaling pathways regulates leaf abscission in cotton in response to chemical defoliants. J Exp Bot, 2019, 70(5):1525-1538

23. Shen C, Wang N, Huang C, Wang M, Zhang X, Lin Z*. Population genomics reveals a fine-scale recombination landscape for genetic improvement of cotton. Plant J, 2019, 99:494-505

24. Miao Y, Xu L, He X, Zhang L, Shaban M, Zhang X, Zhu L*. Suppression of tryptophan synthase activates cotton immunity by triggering cell death via promoting SA synthesis. Plant J, 2019, 98(2):329-345

25. Miao Y, Zhu L, Zhang X*. Down regulation of cotton GbTRP1 leads to accumulation of anthranilates and confers resistance to Verticillium dahliae. J Cotton Res, 2019, 2:19

26. Li J, Hull J, Liang S, Wang Q, Chen L, Zhang Q, Wang M, Mansoon S, Zhang X, Jin S*. Genome-wide analysis of cotton miRNAs during whitefly infestation offers new insights into plant-herbivore interaction. Int J Mol Sci, 2019, (20):5357

27. Khan A, Li Z, Ahmed M, Wang P, Zhang X, Tu L*. Eriodictyol can modulate cellular auxin gradients to efficiently promote in vitro cotton fibre development. BMC Plant Biol, 2019, 19(1):443

28. Qin T, Liu S, Zhang Z, Sun L, He X, Lindsey K, Zhu L*, Zhang X. GhCyP3 improves the resistance of cotton to Verticillium dahliae by inhibiting the E3 ubiquitin ligase activity of GhPUB17. Plant Mol Biol, 2019, 99:379-393

29. Wu Y, Li Y, Li Y, MaY, Zhao Y, Wang C, Chi H, Chen M, Ding Y, Guo X, Min L*, Zhang X. Proteomic analysis reveals that sugar and fatty acid metabolisms play a central role in sterility of the male-sterile line 1355A of cotton. J Biol Chem, 2019, 294(17):7057-7067

30. Wang M, Wang P, Lin M*, Ye Z, Li G, Tu L, Shen C, Li J, Yang Q*, Zhang X*. Evolutionary dynamics of 3D genome architecture following polyploidization in cotton. Nat Plants, 2018, 4(2):90-97

31. Ma Y, Min L*, Wang M, Wang C, Zhao Y, Li Y, Fang Q, Wu Y, Xie S, Ding Y, Su X, Hu Q, Zhang Q, Li X, Zhang X*. Disrupted genome methylation in response to high temperature has distinct affects on microspore abortion and anther indehiscence. Plant Cell, 2018, 30(7):1387-1403

32. Hu H, Wang M, Ding Y, Zhu S, Zhao G, Tu L*, Zhang X. Transcriptomic repertoires depict the initiation of lint and fuzz fibers in cotton (Gossypium hirsutum L.). Plant Biotechnol J, 2018, 16(5):1002-1012

33. Wen T, Wu M, Shen C, Gao B, Zhu D, Zhang X, You C*, Lin Z*. Linkage and association mapping reveals the genetic basis of brown fibre (Gossypium hirsutum). Plant Biotechnol J, 2018, 16(9), 1654–1666

34. Wang P, Zhang J, Sun L, Ma Y, Xu J, Liang S, Deng J, Tan J, Zhang Q, Tu L, Henry D, Jin S*, Zhang X*. High efficient multisites genome editing in allotetraploid cotton (Gossypium hirsutum) using CRISPR/Cas9 system. Plant Biotechnol J, 2018, 16(1):137-150

35. Zhang L, Wang M, Li N, Wang H, Qiu P, Pei L, Xu Z, Wang T, Gao E, Liu J, Liu S, Hu Q, Miao Y, Lindsey K, Tu L, Zhu L, Zhang X*. Long non-coding RNAs involve in resistance to Verticillium dahliae, a fungal disease in cotton. Plant Biotechnol J, 2018, 16(6):1172-1185

36. Song Y, Liu L, Wang Y, Valkenburg D, Zhang X, Zhu L, Thomma B*. Transfer of tomato immune receptor Ve1 confers Ave1-dependent Verticillium resistance in tobacco and cotton. Plant Biotechnol J, 2018, 16(2):638-648

37. Wang M, Wang P, Liang F, Ye Z, Li J, Shen C, Pei L, Wang F, Hu J, Tu L, Lindsey K, He D*, Zhang X*. A global survey of alternative splicing in allopolyploid cotton: landscape, complexity and regulation. New Phytol, 2018, 217(1):163-178

38. Ullah A, Sun H, Hakim, Yang X*, Zhang X. A novel cotton WRKY-gene, GhWRKY6-like, improves salt tolerance by activating the ABA signalling pathway and scavenging of reactive oxygen species. Physiol Plant, 2018, 162(4):439-454

39. Hu Q, Min L, Yang X, Jin S, Zhang L, Li Y, Ma Y, Qi X, Li D, Liu H, Lindsey K, Zhu L*, Zhang X*. Laccase GhLac1 Modulates Broad-Spectrum Biotic Stress Tolerance via Manipulating Phenylpropanoid Pathway and Jasmonic Acid Synthesis. Plant Physiol, 2018, 176(2):1808-1823

40. Hu Q, Zhu L, Zhang X, Guan Q, Xiao S, Min L, Zhang X*. GhCPK33 Negatively Regulates Defense against Verticillium dahliae by Phosphorylating GhOPR3. Plant Physiol, 2018,178(2), 876-889

41. Wang L, Liu N, Wang T, Li J, Wen T, Yang X*, Lindsey K, Zhang X. The GhmiR157a-GhSPL10 regulatory module controls initial cellular dedifferentiation and callus proliferation in cotton by modulating ethylene-mediated flavonoid biosynthesis. J Exp Bot, 2018, 69: 1081-1093

42. Wang L, Liu N, Wang T, Li J, Wen T, Yang X*, Lindsey K, Zhang X. The Ghmir157a/GhSPL10 regulatory module controls initial cellular dedifferentiation and callus proliferation in cotton by modulating ethylene-mediated flavonoid biosynthesis. J Exp Bot, 2018(5), 1081-1093.

43. He X, Zhu L*, Wassan G, Wang Y, Miao Y, Shaban M, Hu H, Sun H, Zhang X. GhJAZ2 attenuates cotton resistance to biotic stresses via the inhibition of the transcriptional activity of GhbHLH171. Mol Plant Pathol, 2018, 19(4): 896-908

44. Sun H, Hu M, Li J, Chen L, Li M, Zhang S, Zhang X, Yang X*. Comprehensive analysis of NAC transcription factors uncovers their roles during fiber development and stress response in cotton. BMC Plant Biol, 2018, 18(1):150

45. Sun L, Alariqi M, Zhu Y, Li J, Li Z, Wang Q, Li Y, Rui H, Zhang X, Jin S*. Red fluorescent protein (DsRed2), an ideal reporter for cotton genetic transformation and molecular breeding. Crop J, 2018, 4: 366-376

46. Zhu L, Li J, Xu Z, Manghwar H, Liang S, Li S, Alariqi M, Jin S*, Zhang X. Identification and selection of resistance to Bemisia tabaci among 550 cotton genotypes in the field and greenhouse experiments. Front Agr Sci Eng, 2018, 5(2): 236-252

47. Keerio A, Shen C, Nie Y, Ahmed M, Zhang X, Lin Z*. QTL mapping for fiber quality and yield traits based on introgression lines derived from Gossypium hirsutum × G. tomentosum. Int J Mol Sci, 2018, 19(1):243

48. He X, Wang T, Xu Z, Liu N, Wang L, Hu Q, Luo X, Zhang X, Zhu L*. The cotton HD-Zip transcription factor GhHB12 regulates flowering time and plant architecture via the GhmiR157-GhSPL pathway. Communications Biology, 2018, 1: 229

49. Li Y, Min L*, Zhang L, Hu Q, Wu Y, Li J, Xie S, Ma Y, Zhang X, Zhu L*. Promoters of Arabidopsis Casein kinase I-like 2 and 7 confer specific high-temperature response in anther. Plant Mol Biol, 2018, 98: 33-49

50. Wang M, Tu L, Lin M, Lin Z, Wang P, Yang Q, Ye Z, Shen C, Li J, Zhang L, Zhou X, Nie X, Li Z, Guo K, Ma Y, Huang C, Jin S, Zhu L, Yang X, Min L, Yuan D, Zhang Q, Lindsey K* , Zhang X*. Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication. Nat Genet, 2017, 49(4):579-587

51. Ullah A, Sun H, Yang X*, Zhang X. Drought coping strategies in cotton: increased crop per drop. Plant Biotechnol J, 2017, 15(3): 271–284

52. Huang C, Nie X, Shen C, You C, Li W, Zhao W, Zhang X* and Lin Z*. Population structure and genetic basis of the agronomic traits of Upland cotton in China revealed by a genome-wide association study using high-density SNPs. Plant Biotechnol J, 2017, 15, 1374-1386

53. Luo J, Liang S, Li J, Xu Z, Li L, Zhu B, Li Z, Lei C, Lindsey K, Chen L*, Jin S*, Zhang X. A transgenic strategy for controlling plant bugs (Adelphocoris suturalis) through expression of double- stranded RNA (dsRNA) homologous to Fatty acyl-CoA reductase (FAR) in cotton. New Phytol, 2017, 215(3): 117

54. Ding Y, Ma Y, Liu N, Xu J, Hu Q, Li Y, Wu Y, Xie S, Zhu L, Min L*, Zhang X. microRNAs involved in auxin signalling modulate male sterility under high-temperature stress in cotton (Gossypium hirsutum). Plant J, 2017, 91: 977-994

55. Guo K, Tu L, He Y, Deng J, Wang M, Huang H, Li Z, Zhang X. Interaction between calcium and potassium modulates elongation rate in cotton fiber cells. J Exp Bot, 2017, 68(18): 5161-5175

56. Sun H, Chen L, Li J, Hu M, Ullah A, He X, Yang X*, Zhang X. The JASMONATE ZIM-domain Gene Family Mediates JA Signaling and Stress Response in Cotton. Plant Cell Physiol, 2017, 58(12): 2139-2154

57. Guo K, Tu L*, Wang P, Du X, Ye S, Luo M and Zhang X. Ascorbate alleviates Fe deficiency-induced stress in cotton (Gossypium hirsutum) by modulating ABA levels. Front Plant Sci, 2017, 4(7):1997

58. Liu N, Tu L, Wang L, Hu H, Xu J, Zhang X*. MicroRNA 157-targeted SPL genes regulate floral organ size and ovule production in cotton. BMC Plant Bio, 2017, 17(1):7

59. Wang M, Wang P, Tu L, Zhu S, Zhang L, Li Z, Zhang Q, Yuan D and Zhang X*. Multi-omics maps of cotton fibre reveal epigenetic basis for staged single-cell differentiation. Nucleic Acids Res, 2016, 44(9):4067-4079

60. Li X, Jin X, Wang H, Zhang X, and Lin Z*. Structure, evolution, and comparative genomics of tetraploid cotton based on a high-density genetic linkage map. DNA Res, 2016, 23 (3): 283-293

61. Hu H, He X, Tu L, Zhu L, Zhu S, Ge Z, Zhang X*. GhJAZ2 negatively regulates cotton fiber initiation by interacting with the R2R3-MYB transcription factor GhMYB25-like. Plant J, 2016, 88(6):921-935

62. Guo K, Du X, Tu L*, Tang W, Wang P, Wang M, Liu Z, Zhang X. Fibre elongation requires normal redox homeostasis modulated by cytosolic ascorbate peroxidase in cotton (Gossypium hirsutum). J Exp Bot, 2016, 67(11):3289-3301

63. Li Y, Tu L*, Pettolino FA, Ji S, Hao J, Yuan D, Deng F, Tan J, Hu H, Wang Q, Llewellyn DJ, Zhang X. GbEXPATR, a species-specific expansin, enhances cotton fibre elongation through cell wall restructuring. Plant Biotechnol J, 2016, 14(3):951-963

64. Zhou T, Yang X, Guo K, Deng J, Xu J, Gao W, Lindsey K, Zhang X*. ROS homeostasis regulates somatic embryogenesis via the regulation of auxin signaling in cotton. Mol Cell Proteomics, 2016, 15(6):2108-2124

65. Min L, Hu Q, Li Y, Xu J, Ma Y, Zhu L, Yang X, Zhang X*. LEAFY COTYLEDON1-CASEIN KINASE I-TCP15-PHYTOCHROME INTERACTING FACTOR4 network regulates somatic embryogenesis by regulating auxin homeostasis. Plant Physiol, 2015, 169(4):2805-2821

66. Wang M, Yuan D, Tu L, Gao W, He Y, Hu H, Wang P, Liu N, Lindsey K, Zhang X*. Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.). New Phytol, 2015, 207(4):1181-1197

67. Yuan D, Tang Z, Wang M, Gao W, Tu L, Jin X, Chen L, He Y, Zhang L, Zhu L, Li Y, Liang Q, Lin Z, Yang X, Liu N, Jin S, Lei Y, Ding Y, Li G, Ruan X, Ruan Y*, Zhang X*. The genome sequence of Sea-Island cotton (Gossypium barbadense) provides insights into the allopolyploidization and development of superior spinnable fibres. Sci Rep, 2015, 5: 17662

68. Wang H, Jin X, Zhang B, Shen C and Lin Z*. Enrichment of an intraspecific genetic map of Upland cotton by developing markers using parental RAD sequencing. DNA Res, 2015, 22(2), 147-160

69. Wu Y, Min L, Wu Z, Yang L, Zhu L, Yang X, Yuan D, Guo X, Zhang X*. Defective pollen wall contributes to male sterility in the male sterile line 1355A of cotton. Sci Rep, 2015, 5:9608

70. Xu L, Zhang W, He X, Liu M, Zhang K, Shaban M, Sun L, Zhu J, Luo Y, Yuan D, Zhang X, Zhu L*. Functional characterization of cotton genes responsive to Verticillium dahliae through bioinformatics and reverse genetics strategies. J Exp Bot, 2014, 65(22):6679-6692

71. Sun L, Zhu L, Xu L, Yuan D, Min L, Zhang X*. Cotton cytochrome P450 CYP82D regulates systemic cell death by modulating the octadecanoid pathway. Nat Commun, 2014, 5:5372

72. Li C, He X, Luo X, Xu L, Liu L, Min L, Jin L, Zhu L*, Zhang X. Cotton WRKY1 mediates the plant defense-to-development transition during infection of cotton by Verticillium dahliae by activating JASMONATE ZIM-DOMAIN1 expression. Plant Physiol, 2014, 166(4):2179-2194

73. Min L, Li Y, Hu Q, Zhu L, Gao W, Wu Y, Ding Y, Liu S, Yang X, Zhang X*. Sugar and auxin signaling pathways respond to high temperature stress during anther development as revealed by transcript profiling analysis in cotton. Plant Physiol, 2014, 164(3):1293-1308

74. Liu N, Tu L, Tang W, Gao W, Lindsey K, Zhang X*. Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense. Plant J, 2014, 80(2):331-344

75. Tang W, Tu L, Yang X, Tan J, Deng F, Hao J, Guo K, Lindsey K, Zhang X*. The calcium sensor GhCaM7 promotes cotton fiber elongation by modulating reactive oxygen species (ROS) production. New Phytol, 2014, 202(2):509-520

76. Han J, Tan J, Tu L*, Zhang X. Peptide hormone gene, GhPSK promotes fibre elongation and contributes to longer and finer cotton fibre. Plant Biotechnol J, 2014, 12(7):861-871

77. Tan J, Tu L, Deng F, Hu H, Nie Y, Zhang X*. A genetic and metabolic analysis revealed that cotton fiber cell development was retarded by flavonoid naringenin. Plant Physiol, 2013, 162(1):86-95

78. Gao W, Long L*, Zhu L, Xu L, Gao W, Sun L, Liu L, Zhang X*. Proteomic and virus-induced gene silencing (VIGS) analyses reveal that Gossypol, Brassinosteroids and Jasmonic acid contribute to the resistance of cotton to Verticillium dahliae. Mol Cell Proteomics, 2013, 12(12):3690-3703

79. Min L, Zhu L, Tu L, Deng F, Yuan D, Zhang X*. Cotton GhCKI disrupts normal male reproduction by delaying tapetum programmed cell death via inactivating starch synthase. Plant J, 2013, 75(5):823-835

80. Jin F, Hu L, Yuan D, Xu J, Gao W, He L, Yang X, Zhang X*. Comparative transcriptome analysis between somatic embryos and zygotic embryos in cotton: evidence for stress response functions in somatic embryo development. Plant Biotechol J, 2013, 12(2):161-173

81. Yang X, Wang L, Yuan D, Lindsey K and Zhang X*. Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. J Exp Bot, 2013, 64(6):1521-1536

82. Jin S, Zhang X, Daniell H*. Pinellia ternata agglutinin expression in chloroplasts confers broad spectrum resistance against aphid, whitefly, Lepidopteran insects, bacterial and viral pathogens. Plant Biotechnol J, 2012, 10(3):313-327

83. Hao J, Tu L, Hu H, Tan J, Deng F, Tang W, Nie Y, Zhang X*. GbTCP, a cotton TCP transcription factor, confers fibre elongation and root hair development by a complex regulating system. J Exp Bot, 2012, 63(17):6267-6281

84. Deng F, Tu L, Tan J, Li Y, Nie Y, Zhang X*. GbPDF1 is involved in cotton fiber initiation via the core cis-element HDZIP2ATATHB2. Plant Physiol, 2012, 158(2):890-904

85. Xu L, Zhu L, Tu L, Liu L, Yuan D, Jin L, Long L and Zhang X*. Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry. J Exp Bot, 2011, 62(15):5607-5621

86. Hu L, Yang X, Yuan D, Zeng F, Zhang X*. GhHmgB3 deficiency deregulates proliferation and differentiation of cells during somatic embryogenesis in cotton. Plant Biotechnol J, 2011, 9: 1038-1048

87. Yang X, Zhang X*. Regulation of somatic embryogenesis in higher plants. Crit Rev Plant Sci, 2010, 29(1):36-57

88. Yang X, Tu L, Zhu L, Fu L, Min L, Zhang X*. Expression profile analysis of genes involved in cell wall regeneration during protoplast culture in cotton by suppression subtractive hybridization and macroarray. J Exp Bot, 2008, 59(13):3661-3674

89. Sun Y, Zhang X*, Nie Y, Guo X, Jin S, Liang S. Production and characterization of somatic hybrids between upland cotton (Gossypium hirsutum) and wild cotton (G. klotzschianum Anderss) via electrofusion. Theor Appl Genet, 2004, 109(3):472-479

90. Guo K, Tu L, Wang P, Du X, Ye S, Luo M, Zhang X, 2016, Ascorbate alleviates Fe deficiency-induced stress in cotton (Gossypium hirsutum) by modulating ABA levels. 2016, Frontiers in Plant Science, doi: 10.3389/fpls.2016.01997

91. Xu Z, Li J, Guo X, Jin S, Zhang X. Metabolic engineering of cottonseed oil biosynthesis pathway via RNA interference. 2016, Sci Rep, 6:33342. doi: 10.1038/srep33342

92. Li J, Zhu L, Hull JJ, Liang S, Daniell H, Jin S, Zhang X. Transcriptome analysis reveals a comprehensive insect resistance response mechanism in cotton to infestation by the phloem feeding insect Bemisia tabaci (whitefly). 2016, Plant Biotechnol J. 14(10): 1956-1975

93. Liu Y, Peng R, Liu F, Wang X, Cui X, Zhou Z, Wang C, Cai X, Wang Y, Lin Z, Wang K. A Gossypium BAC clone contains key repeat components distinguishing sub-genome of allotetraploidy cottons. 2016, Mol Cytogenet, 9: 27. doi: 10.1186/s13039-016-0235-y

94. Dai B, Guo H, Huang C, Zhang X, Lin Z. Genomic heterozygosity and hybrid breakdown in cotton (Gossypium): different traits, different effects. 2016, BMC Genet, 17: 58. doi: 10.1186/s12863-016-0366-5

95. Wang Q, Liu N, Yang X, Tu L, Zhang X*. Small RNA-mediated responses to low- and high-temperature stresses in cotton. 2016, Sci Rep, 18;6:35558. doi: 10.1038/srep35558

96. Li X, Jin X, Wang H, Zhang X, Lin Z. Structure, evolution, and comparative genomics of tetraploid cotton based on a high-density genetic linkage map. 2016, DNA Res. 23(3): 283-293

97. Min L, Hu Q, Li Y, Xu J, Ma Y, Zhu L, Yang X, Zhang X*. LEAFY COTYLEDON1-CASEIN KINASE I-TCP15-PHYTOCHROME INTERACTING FACTOR4 network regulates somatic embryogenesis by regulating auxin homeostasis, 2015, Plant Physiol. 169(4): 2805-2821

98. Gao W, Long L, Xu L, Lindsey K, Zhang X, Zhu L. Suppression of the homeobox gene HDTF1 enhances resistance to Verticillium dahliae and Botrytis cinerea in cotton. 2015, J Integr Plant Biol. 58(5): 503-513

99. Jin S, Singh ND, Li L, Zhang X, Daniell H. Engineered chloroplast dsRNA silences cytochrome p450 monooxygenase, V-ATPase and chitin synthase genes in the insect gut and disrupts Helicoverpa armigera larval development and pupation. 2015, Plant Biotechnol J. 13(3): 435-446

100. Tian G, Cheng L, Qi X, Ge Z, Niu C, Zhang X, Jin S.Transgenic cotton plants expressing double-stranded RNAs target HMG-CoA reductase (HMGR) gene inhibits the growth, development and survival of cotton bollworms. 2015, Int J Biol Sci. 11(11): 1296-1305

101. Li Y, Tu L, Pettolino F, Ji S, Hao J, Yuan D, Deng F, Tan J, Hu H, Wang Q, Llewellyn D, Zhang X. GbEXPATR, a species-specific expansin, enhances cotton fibre elongation through cell wall restructuring. 2015, Plant Biotechnol J. 14(3): 951-963

102. Wu Y, Min L, Wu Z, Yang L, Zhu L, Yang X, Yuan D, Guo X, Zhang X*. Defective pollen wall contributes to male sterility in the male sterile line 1355A of cotton. 2015, Sci Rep. 5: 9608

103. Li Y, Tu L, Ye Z, Wang M, Gao W, Zhang X. A cotton fiber-preferential promoter, PGbEXPA2, is regulated by GA and ABA in Arabidopsis. 2015, Plant Cell Rep. 34(9): 1539-1549

104. Wang M, Yuan D, Tu L, Gao W, He Y, Hu H, Wang P, Liu N, Lindsey K, Zhang X*. Long noncoding RNAs and their proposed functions in fibre development of cotton (Gossypium spp.). 2015, New Phytol. 207(4): 1181-1197

105. Xu L, Zhang W, He X, Liu M, Zhang K, Shaban M, Sun L, Zhu J, Luo Y, Yuan D, Zhang X, Zhu L. Functional characterization of cotton genes responsive to Verticillium dahliae through bioinformatics and reverse genetics strategies. 2014, J Exp Bot. 65(22): 6679-6692

106. Sun L, Zhu L, Xu L, Yuan D, Min L, Zhang X*. Cotton cytochrome P450 CYP82D regulates systemic cell death by modulating the octadecanoid pathway. 2014, Nat Commun. 5: 5372

107. Li C, He X, Luo X, Xu L, Liu L, Min L, Jin L, Zhu L, Zhang X. GbWRKY1 mediates plant defense-to-development transition during infection of cotton by Verticillium dahliae by activating JAZ1 expression. 2014, Plant Physiol. 166(4): 2179-2194

108. Tu L, Tan J, Guo K, Li Z, Zhang X*. Flavonoid pathway in cotton fiber development. 2014, SCIENTIA SINICA Vitae. 44: 758-765 (Review)

109. Liu N, Tu L, Tang W, Gao W, Lindsey K, Zhang X*. Small RNA and degradome profiling reveals a role for miRNAs and their targets in the developing fibers of Gossypium barbadense. 2014, Plant J. 80(2): 331-344

110. Hao J, Chen S, Tu L, Hu H, Zhang X.GhH2A12, a replication-dependent histone H2A gene from Gossypium hirsutum, is negatively involved in development of cotton fiber cells. 2014, Plant Cell Rep. 33(10): 1711-1721

111. Wang H, Li X, Gao W, Jin X, Zhang X, Lin Z. Comparison and development of EST–SSRs from two 454 sequencing libraries of Gossypium barbadense. 2014, Euphytica.198(2): 277

112. Tu J, Zhang M, Wang X, Zhang X, Lin Z. Genetic dissection of upland cotton (Gossypium hirsutum) cultivars developed in Hubei Province by mapped SSRs. 2014, Genet. Mol. Res. 13 (1): 782-790

113. Tang W, He Y, Tu L, Wang M, Li Y, Ruan Y, Zhang X. Down-regulating annexin gene GhAnn2 inhibits cotton fiber elongation and decreases Ca²⁺ influx at the cell apex. 2014, Plant Mol Biol. 85(6): 613-625

114. Zhou T, Yang X, Wang L, Xu J, Zhang X. GhTZF1 regulates drought stress responses and delays leaf senescence by inhibiting reactive oxygen species accumulation in transgenic Arabidopsis. 2014, Plant MolBiol. 85(1-2): 163-177

115. Tang W, Tu L*, Yang X, Tan J, Deng F, Hao J, Guo K, Lindsey K, Zhang X*. The calcium sensor GhCaM7 promotes cotton fiber elongation by modulating reactive oxygen species (ROS) production. 2014, New Phytol. 202(2): 509-520

116. Han J, Tan J, Tu L, Zhang X. A peptide hormone gene, GhPSK promotes fibre elongation and contributes to longer and finer cotton fibre. 2014, Plant Biotechnol J. 12(7): 861-871

117. Min L, Li Y, Hu Q, Zhu L, Gao W, Wu Y, Ding Y, Liu S, Yang X, Zhang X*. Sugar and auxin signaling pathways respond to high temperature stress during anther development as revealed by transcript profiling analysis in cotton. 2014, Plant Physiol. 164(3): 1293-1308

118. Liu G, Li X, Jin S, Liu X, Zhu L, Nie Y, Zhang X*. Overexpression of rice NAC gene SNAC1 improves drought and salt tolerance by enhancing root development and reducing transpiration rate in transgenic cotton. 2014, PLoS One. 28;9(1): e86895

119. Chen X, Gao W, Zhang J, Zhang X, Lin Z. Linkage mapping and expression analysis of miRNAs and their target genes during fiber development in cotton. 2014, BMC Genomics. 14: 706

120. Wang X, Yu Y, Li W, Guo H, Lin Z, Zhang X. Association analysis of yield and fiber quality traits in Gossypium barbadense with SSRs and SRAPs. 2013, Genet Mol Res. 12(3): 3353-3362

121. Liu C, Yuan D, Zhang X, Lin Z*. Isolation, characterization and mapping of genes differentially expressed during fibre development between Gossypium hirsutum and G. barbadense by cDNA-SRAP. 2013, J Genet. 92(2):175-181

122. Wang X, Yu Y, Sang J, Wu Q, Zhang X, Lin Z. Intraspecific linkage map construction and QTL mapping of yield and fiber quality of Gossypium babardense. 2013, AJCS. 7(9):1252-1261

123. Long L, Gao W, Xu L, Liu M, Luo X, He X, Yang X, Zhang X, Zhu L. GbMPK3, a mitogen-activated protein kinase from cotton, enhances drought and oxidative stress tolerance in tobacco. 2013, PCTOC. 116: 153

124. Jin F, Hu L, Yuan D, Xu J, Gao W, He L, Yang X*, Zhang X*. Comparative transcriptome analysis between somatic embryos (SEs) and zygotic embryos in cotton: evidence for stress response functions in SE development. 2013, Plant Biotechnol J. 12(2):161-173

125. Gao W, Long L, Zhu L*, Xu L, Gao W, Sun L, Liu L, Zhang X*. Proteomic and virus-induced gene silencing (VIGS) analyses reveal that Gossypol, brassinosteroids and jasmonic acid contribute to the resistance of cotton to Verticillium dahliae. 2013, Mol Cell Proteomics. 12(12): 3690-36703

126. Tan J, Wang M, Tu L, Nie Y, Lin Y, Zhang X. The flavonoid pathway regulates the petal colors of cotton flower. 2013, PLoS One. 8(8): e72364.

127. Wang M, Yuan D*, Gao W, Li Y, Tan J, Zhang X*. A comparative genome analysis of PME and PMEI families reveals the evolution of pectin metabolism in plant cell walls. 2013, PLoS One. 8(8): e72082.

128. Wang Y, Jin S, Wang M, Zhu L, Zhang X. Isolation and characterization of a conserved domain in the eremophyte H⁺-PPase family. 2013, PLoS One. 8(7): e70099.

129. Xu L, Zahid KR, He L, Zhang W, He X, Zhang X, Yang X, Zhu L. GhCAX3 gene, a novel Ca²⁺/H⁺ exchanger from cotton, confers regulation of cold response and ABA induced signal transduction. 2013, PLoS One. 8(6): e66303

130. He L, Yang X, Wang L, Zhu L, Zhou T, Deng J, Zhang X. Molecular cloning and functional characterization of a novel cotton CBL-interacting protein kinase gene (GhCIPK6) reveals its involvement in multiple abiotic stress tolerance in transgenic plants. 2013, Biochem Biophys Res Commun. 435(2): 209-215

131. Min L, Zhu L*, Tu L, Deng F, Yuan D, Zhang X*. Cotton GhCKI disrupts normal male reproduction by delaying tapetum programmed cell death via inactivating starch synthase. 2013, Plant J. 75(5): 823-835.

132. Tan J, Tu L, Deng F, Hu H, Nie Y, Zhang X*. A genetic and metabolic analysis revealed that cotton fiber cell development was retarded by flavonoid naringenin. 2013, Plant Physiol. 162(1): 86-95

133. Li X, Yuan D, Zhang J, Lin Z, Zhang X. Genetic mapping and characteristics of genes specifically or preferentially expressed during fiber development in cotton. 2013, PLoS One. 8(1): e54444

134. Yang X, Wang L, Yuan D, Lindsey K, Zhang X*. Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis. 2013, J Exp Bot. 64(6): 1521-36

135. Jin S, Zhang X, Daniell H. Pinellia ternata agglutinin expression in chloroplasts confers broad spectrum resistance against aphid, whitefly, Lepidopteran insects, bacterial and viral pathogens. 2012, Plant Biotechnol J. 10(3): 313-327

136. Liu G, Jin S, Liu X, Tan J, Yang X, Zhang X*. Overexpression of Arabidopsis cyclin D2;1 in cotton results in leaf curling and other plant architectural modifications. 2012, PCTOC. 110(2): 261-273

137. Wang B, Nie Y, Lin Z, Zhang X, Liu J, Bai J. Molecular diversity, genomic constitution, and QTL mapping of fiber quality by mapped SSRs in introgression lines derived from Gossypium hirsutum x G. darwinii Watt. 2012, Theor Appl Genet. 125(6): 1263-1274

138. Li X, Yuan D, Wang H, Chen X, Wang B, Lin Z*, Zhang X. Increasing cotton genome coverage with polymorphic SSRs as revealed by SSCP. 2012, Genome. 55(6): 459-470

139. Tan J, Tu L, Deng F, Wu R, Zhang X. Exogenous jasmonic acid inhibits cotton fiber elongation. 2012, J Plant Growth Regul. 31(4): 599-605

140. Hao J, Tu L, Hu H, Tan J, Deng F, Tang W, Nie Y, Zhang X*. GbTCP, a cotton TCP transcription factor, confers fibre elongation and root hair development by a complex regulating system. 2012, J Exp Bot. 63(17): 6267-6281

141. Deng F, Tu L, Tan J, Li Y, Nie Y, Zhang X*. GbPDF1 is involved in cotton fiber initiation via the core cis-element HDZIP2ATATHB2. 2012, Plant Physiol.158(2): 890-904

142. Yang X, Zhang X*, Yuan D, Jin F, Zhang Y, Xu J. Transcript profiling reveals complex auxin signalling pathway and transcription regulation involved in dedifferentiation and redifferentiation during somatic embryogenesis in cotton. 2012, BMC Plant Biol. 12: 110

143. Xu L, Jin L, Long L, Liu L, He X, Gao W, Zhu L, Zhang X. Overexpression of GbWRKY1 positively regulates the Pi starvation response by alteration of auxin sensitivity in Arabidopsis. 2012, Plant Cell Rep. 31(12): 2177-2188

144. Jin S, Liu G, Zhu H, Yang X, Zhang X*. Transformation of Upland Cotton (Gossypium hirsutum L.) with gfp Gene as a Visual Marker. 2012, Journal of Integrative Agriculture. 11(6): 910-919

145. Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z*, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between Gossypium hirsutum and G. barbadense. 2011, BMC Genomics. 12: 15

146. Yuan D, Tu L, Zhang X*. Generation, annotation and analysis of first large-scale expressed sequence tags from developing fiber of Gossypium barbadense L. 2011, PLoS One. 6(7): e22758

147. Hu L, Yang X, Yuan D, Zeng F, Zhang X*. GhHmgB3 deficiency deregulates proliferation and differentiation of cells during somatic embryogenesis in cotton. 2011, Plant Biotechnol J.9(9): 1038-1048

148. Yang G, Tang H, Nie Y, Zhang X*. Responses of cotton growth, yield, and biomass to nitrogen split application ratio. 2011, European Journal of Agronomy. 35(3): 164-170

149. Xu L, Zhu L, Tu L, Guo X, Long L, Sun L, Gao W, Zhang X*. Differential Gene Expression in Cotton Defence Response to Verticillium dahliae by SSH. 2011, Journal of Phytopathology. 159(9): 606-615

150. Zhu L, H X, Yuan D, Xu L, Xu L, Tu L, Shen G, Zhang H, Zhang X*. Genome-wide identification of genes responsive to ABA and cold/salt stresses in Gossypium hirsutum by data-mining and expression pattern analysis. 2011, Agricultural Sciences in China.10(4): 499-508

151. Xu L, Zhu L, Tu L, Liu L, Yuan D, Jin L, Long L, Zhang X*. Lignin metabolism has a central role in the resistance of cotton to the wilt fungus Verticillium dahliae as revealed by RNA-Seq-dependent transcriptional analysis and histochemistry. 2011, J Exp Bot. 62(15): 5607-5621

152. Li Y, Liu D, Tu L, Zhang X*, Wang L, Zhu L, Tan J, Deng F. Suppression of GhAGP4 gene expression repressed the initiation and elongation of cotton fiber. 2010, Plant Cell Rep. 29(2): 193-202

153. Yang X, Zhang X*, Tu L, Min L, Liu G. Multiple shoots induction in wild cotton (Gossypium bickii) through organogenesis and the analysis of genetic homogeneity of the regenerated plants. 2010, Biologia, 65(3): 496-503

154. Yang X, Zhang X*. Regulation of Somatic Embryogenesis in Higher Plants. 2010, Critical Reviews in Plant Sciences, 29(1): 36-57

155. Munis M, Tu L, Ziaf K, Tan J, Deng F, Zhang X*. Critical osmotic, ionic and physiological indicators of salinity tolerance in cotton (Gossypium hirsutum L.) for cultivar selection. 2010, Pak J Bot, 42(3):1685-1694

156. Munis M, Tu L, Deng F, Tan J, Xu L, Xu S, Long L, Zhang X*. A thaumatin-like protein gene involved in cotton fiber secondary cell wall development enhances resistance against Verticillium dahliae and other stresses in transgenic tobacco. 2010, Biochem BiophysRes Commun, 393(1): 38-44

157. Lin ZX, Zhang Y, Zhang X*, Guo X. A high-density integrative linkage map for Gossypium hirsutum. 2009, Euphytica, 166(1): 35-45

158. Fu L, Yang X, Zhang X*, Wang Z, Feng C, Liu C, Jiang P, Zhang J. Regeneration and identification of interspecific asymmetric somatic hybrids obtained by donor-recipient fusion in cotton. 2009, Chin Sci Bull, 54(17): 3035-3044

159. Jin S, Mushke R, Zhu H, Tu L, Lin Z, Zhang Y, Zhang X*. Detection of somaclonal variation of cotton (Gossypium hirsutum) using cytogenetics, flow cytometry and molecular markers. 2008, Plant Cell Rep, 27(8):1303-1316

160. He D, Lin Z , Zhang X*, Zhang Y, Li W, Nie Y, Guo X. Dissection of genetic variance of fibre quality in advanced generations from an interspecific cross of Gossypium hirsutum and G. barbadense. 2008, Plant Breeding,127(3): 286-294

161. Zhang Y，Lin Z, Xia Q, Zhang M, Zhang X*. Characteristics and analysis of simple sequence repeats in the cotton genome based on a linkage map constructed from a BC1 population between Gossypium hirsutum and G. barbadense. 2008, Genome, 51(7): 534-546

162. Wang H, Lin Z, Zhang X, Chen W, Guo X*, Nie Y and LiY. Mapping and quantitative trait loci analysis of verticillium wilt resistance genes in cotton. 2008, J Integr Plant Biol, 50(2): 174-182

163. Liu D, Tu L, Li Y, Wang L, Zhu L, Zhang X*. Genes encoding fasciclin-like Arabinogalactan proteins are specifically expressed during cotton fiber development. 2008, Plant Mol Biol Report. 26(2): 98-113

164. Liu D, Tu L, Wang L, Li Y, Zhu L, Zhang X*. Characterization and expression of plasma and tonoplast membrane aquaporins in elongating cotton fibers. 2008, Plant Cell Rep. 27(8): 1385-1394

165. Yang X, Tu L, Zhu L, Fu L, Min L, Zhang X*. Expression profile analysis of genes involved in cell wall regeneration during protoplast culture in cotton by suppression subtractive hybridization and macroarray. 2008, J Exp Bot. 59(13): 3661-3674

166. Zhu H, Tu L, Jin S, Xu L, Tan J, Deng F, Zhang X*. Analysis of genes differentially expressed during initial cellular dedifferentiation in cotton. 2008, Chin Sci Bull. 53(23):3666-3676

167. Guo X, Huang C, Jin S, Liang S, Nie Y, Zhang X*. Agrobacterium-mediated transformation of Cry1C, Cry2A and Cry9C genes into Gossypium hirsutum and plant regeneration. 2007, Biologia Plantarum, 51(2): 242-248

168. Zhang Y, Lin Z, Li W, Tu L, Nie Y, Zhang X*. Studies of new EST-SSRs derived from Gossypium barbadense. 2007, Chin Sci Bull. 52(18): 2522-2531

169. He D, Lin Z, Zhang X*, Nie Y, Guo X, Zhang Y, Li W. QTL mapping for economic traits based on a dense genetic map of cotton with PCR-based markers using the interspecific cross of Gossypium hirsutum × Gossypium barbadense. 2007, Euphytica. 153(1-2): 181-197

170. Tu L, Zhang X*, Liu D, Jin S, Cao J, Zhu L, Deng F, Tan J, Zhang C. Suitable internal control genes for qRT-PCR normalization in cotton fiber development and somatic embryogenesis. 2007, Chin Sci Bull. 52(22): 3110-3117

171. Tu L, Zhang X*, Liang S, Liu D, Zhu L, Zeng F, Nie Y, Guo X, Deng F, Tan J, Xu L. Genes expression analyses of sea-island cotton (Gossypium barbadense L.) during fiber development. 2007, Plant Cell Rep. 26(8): 1309-1320

172. Yang X, Guo X, Zhang X*, Nie Y, Jin S. Plant regeneration from Gossypium davidsonii protoplasts via somatic embryogenesis. 2007. Biologia Plantarum, 51(3): 533-537

173. Zeng F, Zhang X*, Jin S, Cheng L, Liang S, Hu L, Guo X, Nie Y, Cao J. Chromatin reorganization and endogenous auxin/cytokinin dynamic activity during somatic embryogenesis of cultured cotton cell. 2007, Plant Cell Tissue Organ Cult. 90(1): 63-70

174. Yang X, Zhang X* , Jin S, Tu L, Wang L. Production and characterization of asymmetric hybrids between upland cotton Coker 201 (Gossypium hirsutum) and wild cotton (G. klozschianum Anderss). 2007, Plant Cell Tissue Organ Cult. 89(2-3): 225-235

175. Zeng F, Zhang X*, Cheng L, Hu L, Zhu L, Cao J, Guo X. A draft gene regulatory network for cellular totipotency reprogramming during plant somatic embryogenesis. 2007, Genomics. 90(5): 620-628

176. Zhu L, Zhang X*, Tu L, Zeng F, Nie Y, Guo X. Isolation and characterization of two novel dirigent-like genes highly induced in cotton (Gossypium barbadense and G. hirsutum) after infection by Verticillium dahliae. 2007, Journal of Plant Pathology, 89(1): 41-45

177. Zeng F, Zhang X*, Zhu L, Tu L, Guo X, Nie Y. Isolation and characterization of genes associated to cotton somatic embryogenesis by suppression subtractive hybridization and macroarray. 2006, Plant Mol Biol. 60(2): 167-183

178. Sun Y, Zhang X*, Huang C, Guo X, Nie Y. Somatic embryogenesis and plant regeneration from different wild diploid cotton (Gossypium) species. 2006, Plant Cell Rep. 25(4): 289-296

179. Sun Y, Nie Y, Guo X, Huang C, Zhang X*. Somatic hybrids between Gossypium hirsutum L. (4×) and G. davidsonii Kellog (2×) produced by protoplast fusion. 2006, Euphytica. 151(3): 393-400

180. Liu D, Zhang X*, Tu L, Zhu L, Guo X. Isolation by suppression-subtractive hybridization of genes preferentially expressed during early and late fiber development stages in cotton. 2006, Mol Biol (Mosk) , 40(5): 741-749

181. Liu D, Guo X, Lin Z, Nie Y, Zhang X*. Genetic Diversity of Asian Cotton (Gossypium arboreum L.) in China Evaluated by Microsatellite Analysis. 2006, Genet Resour Crop Evol. 53(6): 1145-1152

182. Jin S, Zhang X* , Nie Y, Guo X, Liang S, Zhu H. Identification of a novel elite genotype for in vitro culture and genetic transformation of cotton. 2006, Biologia Plantarum, 50(4): 519-524

183. Jin S, Liang S, Zhang X*, Nie Y, Guo X. An efficient grafting system for transgenic plant recovery in cotton (Gossypium hirsutum L.). 2006, Plant Cell Tissue Organ Cult, 85(2):181-185

184. Wu J, Zhang X*, Nie Y, Luo X. High-efficiency transformation of Gossypium hirsutum embryogenic calli mediated by Agrobacterium tumefaciens and regeneration of insect-resistant plants. 2005, Plant Breeding, 124(2):142-146

185. Sun Y, Zhang X*, Nie Y, Guo X. Production of fertile somatic hybrids of Gossypium hirsutum + G. bickii and G. hirsutum + G. stockii via protoplast fusion. 2005, Plant Cell Tissue Organ Cult. 83(3): 303-310

186. Sun Y, Zhang X*, Huang C, Nie Y, Guo X. Plant regeneration via somatic embryogenesis from protoplasts of six explants in Coker 201 (Gossypium hirsutum). 2005, Plant Cell Tissue Organ Cult. 82(3): 309-315

187. Sun Y, Zhang X*, Huang C, Nie Y, Guo X. Factors influencing in vitro regeneration from protoplasts of wild cotton (G. klotzschianum A) and RAPD analysis of regenerated plantlets. 2005, Plant Growth Regulation, 46(1): 79-86

188. Lin Z, He D, Zhang X*, Nie Y, Guo X, Feng C and McD J. STEWARTLinkage map construction and mapping QTL for cotton fibre quality using SRAP, SSR and RAPD. 2005, Plant Breeding, 124(2):180-187

189. Jin S, Zhang X*, Liang S, Nie Y, Guo X, Huang C. Factors affecting transformation efficiency of embryogenic callus of Upland cotton (Gossypium hirsutum) with Agrobacterium tumefaciens. 2005, Plant Cell Tissue Organ Cult. 81(2): 229-237

190. He D, Lin Z, Zhang X*, Nie Y, Guo X, Feng C, Stewart J. Mapping QTLs of traits contributing to yield and analysis of genetic effects in tetraploid cotton. 2005, Euphytica. 144(1-2):141-149

191. Wu J, Zhang X*, Nie Y, Jin S, Liang S. Factors affecting somatic embryogenesis and plant regeneration from a range of recalcitrant genotypes of Chinese cottons (Gossypium hirsutum L.). 2004, In Vitro Cellular & Developmental Biology - Plant. 40(4): 371-375

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